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✨ MOVE update#89

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Commits on Sep 14, 2023

• ✨ Allow turning off input scaling

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Commits on Sep 26, 2023

• ✨ Add new layers module

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Commits on Oct 2, 2023

• 🚧 Re-do encode data module

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• ✨ 🚧 Add exceptions module

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• 🚧 Save encoded data in one file

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• ✨ 🚧 Introduce new dataset/loader objects

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Commits on Oct 3, 2023

• ✨ Add "SplitOutput" module

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• 🚧 Add type hint to splitting modules

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Commits on Oct 18, 2023

• 🚧 Add shape data to dataset

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• 🚧 Add sub-task, add in/output paths to task

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• ✨ Introduce Training Loop sub-task

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• 🚚 Move legacy VAE

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• ✨ 🚧 Add new VAE

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• 🎨 Sort imports

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• ✨ Make x-label configurable

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• 🚧 Rename params

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• ✨ 🚧 Add train model task

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Commits on Oct 20, 2023

• 🚧 Add base VAE class

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Commits on Jan 8, 2024

• ✨ 🚧 Add CSV writer

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• 🚧 Add properties to data classes

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• 🚧 Enhance base task module

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• ✨ 🚧 Add metrics sub-task module

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• 🚧 Add latent space analysis sub-task

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• ♻️ 🚧 Refactor tasks

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• 🚧 Adjust MRO

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Commits on Jan 10, 2024

• ♻️ 🚧 Refactor CSV writer mixin

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Commits on Jan 11, 2024

• ✨ 🚧 Make MOVE dataset perturbable

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• ✨ 🚧 Add feature importance sub-task module

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• 🐛 Fix circular import

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• 🐛 Fix properties

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• 🚧 Make no grad

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• 🚧 Save model

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• 🚧 Add functions to save/reload models

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• 🐛 Properly save CSV results

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• 🐛 Iterate through datasets

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• 🔧 🚧 Add data loader config

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Commits on Jan 15, 2024

• 🚧 Add split input layer

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• 🐛 🚧 Adjust logger name

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• 🎨 Type hinting

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• 🔈 Log progress during training

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Commits on Jan 16, 2024

• 🐛 Fix logger name

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• ✨ 🚧 Add VAE-T module

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• 🚧 Log gradients

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Commits on Jan 19, 2024

• 🔧 Add optimizer configs

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• 🐛 🚧 Remove extra layer

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• 🚧 Add output dir task

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• 🚧 Freeze model

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• 🐛 🚧 Fixes and grad clipping

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• ✨ Save task as YAML

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• 🔧 🚧 Add config dataclasses

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• 🚧 Add activation to continuous output

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Commits on Jan 22, 2024

• 🚧 Reload from abc class

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• 🎨 Type hints

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• 🎨 🚧 Add alias, type hint

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• ♻️ 🚧 Add select feature, refactor feat. idx

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• 🎨 Type hints

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• 🔧 🚧 Add config dataclasses

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• ✨ Properly sanitize filenames

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• ♻️ 🚧 Use new config data classes

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• ✨ 🚧 Add projection sub-task

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• 🚧 Ensure no perturbations

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• 🚚 Move modules

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• 🐛 Correctly instantiate training loop

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• 🐛 Fix mapping unpacking

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• 🔈 Logging

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Commits on Jan 23, 2024

• 🚧 Save loop config

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Commits on Jan 26, 2024

• 🐛 Instantiate loop

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• 🚧 Imports

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Commits on Jan 31, 2024

• ♻️ 🚧 Store datasets in list

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• ✨ Add contrast module

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• 🚧 Reconstruct

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Commits on Feb 1, 2024

• 🙈 Ignore Nbooks

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• 🔥 Remove model

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• ✨ Add HDI module

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• 🎨 Sort imports, type hinting

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• 🙈 Ignore non-default config files

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Commits on Feb 9, 2024

• ♻️ 🚧 Refactor

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• ✨ 🚧 Add reservoir module

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• ♻️ Return tuple instead of stacked tensor

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• 🔥 Remove files

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• 🔥 Remove files

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Commits on Feb 13, 2024

• 🐛 Fix validation of stream size

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• ✨ 🚧 Add FDR module

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Commits on Feb 15, 2024

• ✨ Fill function

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• 🎨 Improve IntArray type alias

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• ✨ Facet grid plots

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Commits on Mar 12, 2024

• 🚧 Ignore NaNs in loss

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Commits on Mar 13, 2024

• 🚧 Return small reservoir

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Commits on Mar 21, 2024

• 🐛 Split output

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• 🚧 Remove redundant class

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Commits on Mar 25, 2024

• 🐛 Fix metrics

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• 🚧 Exception handling UMAP

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Commits on Apr 8, 2024

• 🚧 Save loop config

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Commits on Apr 16, 2024

• 🎨 Type hints

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• 🚧 Minor functions

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• 🔧 Add perturbation config

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Commits on Apr 18, 2024

• ♻️ 🚧 Re-structure mixins

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• 🚧 Make configs optional

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Commits on Apr 22, 2024

• ✨ 🚧 Add associations module

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Commits on Apr 23, 2024

• ♻️ 🚧 Return dist args as dict

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• 🎨 Organize imports

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• 🚚 🚧 Move VAE-t

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• ♻️ 🚧 Refactor VAE with distribution

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Commits on May 3, 2024

• 🐛 🚧 Fix metrics calculation

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• 🔧 Add config for VAE-normal

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Commits on May 23, 2024

• 🎨 Sort imports

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• 🚧 Fix supported distributions

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• 🚧 Move qualname to own module

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• 🚧 Update config schema

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• 🚚 🚧 Move deprecated schemas

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Commits on May 28, 2024

• 🚧 🔥 Fix imports of deprecated classes

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• 🚧 🔧 Add/move configs to store

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• 🚧 Update command line

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• 🔧 Update tutorial config

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Commits on May 29, 2024

• 🚧 🐛 Register resolvers

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• 🚧 Enable latent space task

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• ✨ Create figure module

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• 🎨 Update labels and type hints

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• 🐛 Correctly handle DataFrame

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• 🚧 Plot regularization error

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• 📝 🔈 Warn about existing model

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• 🚧 ✨ Handle DataFrame

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• 🚧 Generate metrics boxplot

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• 🚧 Make labels optional

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• 🚧 Save plot PNG

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• 🚧 Plot feature importance

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• 🚧 Allow fig kwargs

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• 🎨 Type hints

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• 🎨 Sort imports

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Commits on May 30, 2024

• 🚧 Configure associations task

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• 📝 Docstrings

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Commits on Jul 8, 2024

• 🚧 Add dataset attributes

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• ✨ Instantiate from config

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• 📝 Update tutorial

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• 🎨 🚧 Clean-up imports/style

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Commits on Jul 12, 2024

• 🔧 Configure item sep for multirun

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• ✨ Allow CSV writer to append

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• 🚧 Add tuning task

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• 📝 Add docstrings

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• 🚧 Ensure protocol 4 is used to save models

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• 🚧 Tune based on loss

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• 🚧 Create splitting module

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Commits on Jul 16, 2024

• ♻️ 🚧 Do not sort indices

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• 🚧 Split data

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• 🚧 Load correct data split

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• 🚧 Record loss using test dataloader

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Commits on Jul 17, 2024

• 🐛 Fix orphan tasks

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• 🚧 Record accuracy metrics

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• 🚧 Add stability tuning

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• ✨ Accept CSV files as input

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• 📝 Comment/docstrings

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Commits on Jul 30, 2024

• 🔊 Re-arrange logging

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• ♻️ Plot epochs instead of steps

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• 🎨 Add overload

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• 🚧 Use all data for plots

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Commits on Aug 2, 2024

• 🚧 Apply global seed

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Commits on Aug 6, 2024

• ♻️ 🚧 Refactor

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Commits on Aug 29, 2024

• 🚧 Read TSV files

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• ♻️ Create generate grid function

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Commits on Sep 3, 2024

• ♻️ 🔧 Change batch size config

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• 🐛 Handle missingness

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• 🐛 Do not shuffle test data

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Commits on Sep 10, 2024

• 🚧 Correct op names

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• 🐛 Handle NaNs in norm

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• 🚧 Add/sort imports

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• 🚧 Add missing import

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• 🐛 🚧 Fix circular imports

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Commits on Sep 11, 2024

• 🐛 Plot boxplots if NaNs

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• 🚧 Handle NaNs in accuracy

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Commits on Sep 12, 2024

• ♻️ Make mapping a property

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• 🐛 Fix factory method

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Commits on Sep 16, 2024

• ✨ Add scale module

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• 🚧 Determine scale automatically

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Commits on Sep 27, 2024

• 🚧 🔧 Update config

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• 🚧 Start epoch/step at 1

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Commits on Sep 30, 2024

• 🚧 🐛 Handle no discrete datasets

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Commits on Oct 1, 2024

• 🚧 Refactor empty loss tensors

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• ✨ Add Prodigy optimizer

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• ✨ Log LR

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• 🔇 Remove print statement

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• 🚧 Add import

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• 🐛 Correctly generate file names

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Commits on Oct 28, 2024

• 🔧 🚧 Implement weights on VAE

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