Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add support for backing up Aviti runs to PDC #442

Open
wants to merge 15 commits into
base: master
Choose a base branch
from
Open

Add support for backing up Aviti runs to PDC #442

wants to merge 15 commits into from
+124 −59

Commits on Nov 6, 2024

  1. todo comment

    @ssjunnebo
    ssjunnebo committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    fcebbb3 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' of https://github.com/SciLifeLab/TACA into aviti

    @ssjunnebo
    ssjunnebo committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    01cfb6f View commit details
    Browse the repository at this point in the history

  3. Initial setup for backing up aviti data to pdc

    @ssjunnebo
    ssjunnebo committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    dafcdec View commit details
    Browse the repository at this point in the history

Commits on Nov 7, 2024

  1. Updates to include aviti in backup

    @ssjunnebo
    ssjunnebo committed Nov 7, 2024
    Configuration menu
    Copy the full SHA
    8699c06 View commit details
    Browse the repository at this point in the history

Commits on Nov 11, 2024

  1. More aviti updates

    @ssjunnebo
    ssjunnebo committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    48eff4a View commit details
    Browse the repository at this point in the history

  2. Update element_runs with archive timestamp

    @ssjunnebo
    ssjunnebo committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    44e3a2a View commit details
    Browse the repository at this point in the history

Commits on Nov 12, 2024

  1. Fix connection details

    @ssjunnebo
    ssjunnebo committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    0b9e989 View commit details
    Browse the repository at this point in the history

  2. Get the actual doc, not ID, from statusdb

    @ssjunnebo
    ssjunnebo committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    5e5c27d View commit details
    Browse the repository at this point in the history

  3. Grammar

    @ssjunnebo
    ssjunnebo committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    6256924 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'master' of https://github.com/NationalGenomicsInfrastru… 

    …cture/TACA into aviti
    @ssjunnebo
    ssjunnebo committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    54879fc View commit details
    Browse the repository at this point in the history

  5. Versioning

    @ssjunnebo
    ssjunnebo committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    bcb203b View commit details
    Browse the repository at this point in the history

Commits on Nov 14, 2024

  1. "AV" could appear in an Illumina run, use "_AV" instead

    @ssjunnebo
    ssjunnebo committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    7abe357 View commit details
    Browse the repository at this point in the history

  2. Update run_status to archived

    @ssjunnebo
    ssjunnebo committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    3f0530a View commit details
    Browse the repository at this point in the history

  3. Ruff formatting

    @ssjunnebo
    ssjunnebo committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    7cf5c4d View commit details
    Browse the repository at this point in the history

Commits on Nov 18, 2024

  1. Use regex to determine run type aviti

    @ssjunnebo
    ssjunnebo committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    f1c49d8 View commit details
    Browse the repository at this point in the history