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@NabaviLab

CompGBI LAB

Developing novel Computational methods to analayze Genomics data and Biomedical Images.

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  1. CNV-Sim CNV-Sim Public

    Copy Number Variations (CNV) Simulator

    Python 11 8

  2. sigGCN sigGCN Public

    Python 10 4

  3. Multimodal-GNN-for-Cancer-Subtype-Clasification Multimodal-GNN-for-Cancer-Subtype-Clasification Public

    Code for paper, A Multimodal Graph Neural Network Framework for Cancer Molecular Subtype Classification

    Python 10 1

  4. SigEMD SigEMD Public

    R package for differential gene expression analysis in single-cell RNAseq

    R 7 2

  5. Prostate-Cancer Prostate-Cancer Public

    Python 6 3

  6. VarSimLab VarSimLab Public

    A complete command-line pipeline to simulate genomic variations

    Python 4 1

Repositories

Showing 10 of 31 repositories
  • SEACON Public

    A tool for allele-specific copy number profiling.

    NabaviLab/SEACON’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Oct 2, 2024
  • stMMC Public

    Code repo for ""Multi-modal Spatial Clustering for Spatial Transcriptomics Utilizing High-resolution Histology Images"

    NabaviLab/stMMC’s past year of commit activity
    Python 0 0 0 0 Updated Sep 4, 2024
  • Benchmarking_Distance_Functions_in_Siamese_Networks Public
    NabaviLab/Benchmarking_Distance_Functions_in_Siamese_Networks’s past year of commit activity
    Python 0 0 0 0 Updated Aug 19, 2024
  • DCCNV Public
    NabaviLab/DCCNV’s past year of commit activity
    Python 0 0 0 0 Updated Jul 18, 2024
  • CAPTURE Public
    NabaviLab/CAPTURE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 18, 2024
  • Sequential_Registration Public
    NabaviLab/Sequential_Registration’s past year of commit activity
    Python 0 0 0 0 Updated May 3, 2024
  • Bioinformatic-Module-Platform Public
    NabaviLab/Bioinformatic-Module-Platform’s past year of commit activity
    JavaScript 0 0 0 0 Updated Apr 17, 2024
  • PCTM Public
    NabaviLab/PCTM’s past year of commit activity
    Python 0 0 0 0 Updated Apr 17, 2024
  • Mammogram-Current-Prior Public
    NabaviLab/Mammogram-Current-Prior’s past year of commit activity
    Python 0 0 0 0 Updated Mar 29, 2024
  • Image_Registration_Platform Public

    An advanced Image Registration platform utilizing a published algorithm for efficient pairwise and sequential image registration. Supports normalization and transformation across multiple channels with executables for Windows and macOS.

    NabaviLab/Image_Registration_Platform’s past year of commit activity
    Python 0 0 0 0 Updated Mar 18, 2024
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