Repositories list

• SEACON

  Public
  A tool for allele-specific copy number profiling.

  Python

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Oct 2, 2024Oct 2, 2024

• stMMC

  Public
  Code repo for ""Multi-modal Spatial Clustering for Spatial Transcriptomics Utilizing High-resolution Histology Images"

  Python

  •0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

• Benchmarking_Distance_Functions_in_Siamese_Networks

  Public
  Python

  •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• DCCNV

  Public
  Python

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• CAPTURE

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• Sequential_Registration

  Public
  Python

  •0•0•0•0•Updated May 3, 2024May 3, 2024

• Bioinformatic-Module-Platform

  Public
  JavaScript

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• PCTM

  Public
  Python

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• Mammogram-Current-Prior

  Public
  Python

  •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

• Image_Registration_Platform

  Public
  An advanced Image Registration platform utilizing a published algorithm for efficient pairwise and sequential image registration. Supports normalization and transformation across multiple channels with executables for Windows and macOS.

  Python

  •0•0•0•0•Updated Mar 18, 2024Mar 18, 2024

• Advanced-Feature-Extraction-and-Outlier-Detection

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

• Multimodal-GNN-for-Cancer-Subtype-Clasification

  Public
  Code for paper, A Multimodal Graph Neural Network Framework for Cancer Molecular Subtype Classification

  Python

  •

  MIT License

  •1•10•2•0•Updated Oct 30, 2023Oct 30, 2023

• Biological-Biomedical-Image-Registration

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Oct 24, 2023Oct 24, 2023

• ufcn

  Public
  Python

  •1•2•0•0•Updated Oct 12, 2023Oct 12, 2023

• MammogramSoftware

  Public
  C#

  •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

• scgemoc

  Public
  0•0•2•0•Updated Jun 9, 2023Jun 9, 2023

• Prostate-Cancer

  Public
  Python

  •3•6•1•0•Updated Dec 29, 2022Dec 29, 2022

• GCN-on-Molecular-Subtype

  Public
  Python

  •3•1•1•0•Updated Jan 20, 2022Jan 20, 2022

• sigDGCNb

  Public
  single-cell clustering using GCN and self-supervised learning

  Python

  •1•1•0•0•Updated Aug 26, 2021Aug 26, 2021

• TSCNV

  Public
  Copy number variation detection for next generation sequencing data using TV-L1

  MATLAB

  •1•0•1•0•Updated Jun 23, 2021Jun 23, 2021

• sigGCN

  Public
  Python

  •4•10•2•0•Updated Apr 10, 2021Apr 10, 2021

• SigEMD

  Public
  R package for differential gene expression analysis in single-cell RNAseq

  R

  •2•7•5•0•Updated Jun 17, 2020Jun 17, 2020

• DL-FFDM

  Public
  AI project of Medical image

  Python

  •0•0•0•0•Updated Apr 4, 2020Apr 4, 2020

• RU-Net

  Public
  Residual Deep Learning System for Mass Segmentation and Classification in Mammography

  MATLAB

  •1•3•1•0•Updated Jun 1, 2019Jun 1, 2019

• TNBC_project_figures

  Public
  R markdown files and HTML output for figures 5,6 and 8

  HTML

  •0•0•0•0•Updated May 31, 2019May 31, 2019

• VarSimLab

  Public
  A complete command-line pipeline to simulate genomic variations

  genomicssimulationgenomicvariation

  Python

  •

  MIT License

  •1•4•3•0•Updated Apr 10, 2019Apr 10, 2019

• CNV-Sim

  Public
  Copy Number Variations (CNV) Simulator

  Python

  •8•11•3•1•Updated Jul 30, 2018Jul 30, 2018

• CNV-Visualizer

  Public
  Visualizing Copy Number Variations

  JavaScript

  •

  MIT License

  •1•1•2•0•Updated Apr 27, 2017Apr 27, 2017

• TNBC_Project

  Public
  Integrative analysis of triple-negative breast cancer (TNBC) datasets

  HTML

  •0•1•0•0•Updated Oct 15, 2016Oct 15, 2016

• nabavilab.github.io

  Public
  Build a Jekyll blog in minutes, without touching the command line.

  CSS

  •

  MIT License

  •35k•0•0•0•Updated Aug 30, 2016Aug 30, 2016