v0.4.1

Bug Fixes

• ci: adjust commit message of copyright-preamble.yml to fit conventional commits format (#369) (e067895)
• GISAID lineage extraction [B.1.1.529 (probably).fasta] (#372) (7750862)

v0.4.0

Features

• technology: add Oxford Nanopore processing (#305) (55f38f3)

Bug Fixes

• add bam index for extract_reads_of_interest (#366) (5f5dd27)
• changed contigs file for quast-rule to avoid workflow to stop because of low read numbers (#338) (2d0e246)
• changed JSON schema validator and updated files #364 (75e62f2)

Performance Improvements

• changed chunksize of read json file from gisaid, excluded lineage without name (#328) (b9e5c49)

v0.3.1

Bug Fixes

• nested function usage and remove code duplication (#323) (91e3ce9)

v0.3.0

Features

• add aggregation rule for publication plots (#275) (a93bc18)
• add more voc mutations to config (#314) (5098605)
• add plot of reads needed for sufficient lineage calling (#263) (982f997)
• add plot of variants over time (#279) (66ab121)
• add schemes for sample sheet and config file (#278) (09976b3)
• add standard reference lineages for kallisto based lineage calling (#280) (6bb32f6)
• add todo action (#277) (c1e44c5)
• add workflow catalog yml (#199) (2013533)
• comparison of assemblers (#172) (8233829)

Bug Fixes

• add "snakemake" in the readme for the Snakemake Workflow Catalog requirements (#309) (2e5212c)
• changed call config file in update-sample-sheet (#307) (406aef7)
• shotgun typo in config.yaml (#308) (d30f02b)
• specify snakemake version used in pangolin env (#284) (79a12a8)

v0.2.5

Bug Fixes

• sha tag name (#273) (b6d1265)

v0.2.4

Bug Fixes

• add log in to quay registry (#271) (16080de)

v0.2.3

Bug Fixes

• update readme to trigger release (#269) (19129a9)

v0.2.2

Bug Fixes

• rmv path for buildah (#265) (2341a61)

v0.2.1

Bug Fixes

• container version tag (#262) (d4c1ef6)

v0.2.0

Features

• adding new rule update_sample to workflow (#254) (3878c1b)

Bug Fixes

• maximize build space for container image (#261) (0de2cc9)