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28 Open 626 Closed
28 Open 626 Closed
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Issues list

bismark_methylation_extractor samtools view: writing to standard output failed: Broken pipe
#721 opened Dec 16, 2024 by caaswangzhen
4
Unable to read file magic number
#716 opened Dec 4, 2024 by GaojieLi-dot
2
Low Mapping efficiency
#713 opened Nov 7, 2024 by Marh32
9
Better Handling of Bismark2Report Uninitialized Error due to missing nucleotide key in nucleotide.stats report
#711 opened Nov 4, 2024 by rhondene
1
Forward read data look great, paired end and reverse reads look erroneous
#708 opened Oct 20, 2024 by robertocnava
2
Issue with Alignment Results Using Soft-Masked Genome in Bismark
#705 opened Oct 14, 2024 by Chanspace
3
Visualizing the CpG, CHG and CHH in Seqmonk
#704 opened Oct 12, 2024 by lahyusof
1
Getting strand information from/for bedGraph/coverage files
#700 opened Sep 24, 2024 by jonasbucherETH
1
Bismark silently outputs incorrect results when UMIs are added using Illuminas bcl-convert
#699 opened Sep 11, 2024 by lars-work-sund
7
[help] Can Bismark handle diploid reference genome please?
#697 opened Sep 6, 2024 by lizhe-gis
2
the error when dedup the sam when use the bismak
#695 opened Sep 2, 2024 by Jiangjiangzhang6
1
Use SRR files with .rar (ziped) format
#686 opened Jul 29, 2024 by iranianuser
1
help combining bismark pipeline with methylated UMIs
#680 opened Jun 25, 2024 by shawpa
8
Spiky position in the M-Bias plot
#673 opened Jun 13, 2024 by neolithlee
5
Issue with bismark_genome_prep
#672 opened Jun 12, 2024 by maf222
7
Some trouble with the FastQC report
#667 opened Apr 29, 2024 by Citrusyh
3
Bismark Extract failed always ran out of memory after 8hrs.
#662 opened Mar 13, 2024 by RachaelAjayi
4
pipe with bismark_methylation_extractor
#660 opened Mar 6, 2024 by jksr
1
Number of bisulfite transformed reads are not equal between Reads 1 and 2
#657 opened Feb 27, 2024 by itsjoeka
6
Bismark issues 0.24.2
#652 opened Feb 13, 2024 by NeGomics
7
Is are ways to decrease the memory requirement of coverage2cytosine at the expense of computation time?
#650 opened Feb 2, 2024 by onurcanbektas
2
advice on data analysis
#649 opened Jan 11, 2024 by riyabelani
1
question about difference of detected cytosine sites between CX_report.txt and bismark.cov.gz
#647 opened Jan 3, 2024 by yinzhuo0322
4
MAPQ Filtering Post Alignment Using --local Parameter
#646 opened Jan 2, 2024 by allenloong
2
bismark bowtie2
#645 opened Dec 27, 2023 by yhj-j
3
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