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pipe with bismark_methylation_extractor #660

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jksr opened this issue Mar 6, 2024 · 1 comment

jksr commented Mar 6, 2024

I wonder if it is possible to use pipe as input to bismark_methylation_extractor instead of file? something like

samtools view bam.bam|head -1| bismark_methylation_extractor

Owner

FelixKrueger commented Mar 6, 2024

I am afraid this is not implemented :(

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