removing old outputs, renaming folder misc -> img (#241)

* removing old outputs, renaming folder misc -> img * removing SAVE_PATH variable which is unusued and now causes issues when we removed the /output directory
CDCgov · Sep 3, 2024 · 0a3ba3d · 0a3ba3d
1 parent 7ba2d25
commit 0a3ba3d
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Showing 14 changed files with 2 additions and 1,584 deletions.
diff --git a/.gitignore b/.gitignore
@@ -49,11 +49,7 @@ testing.py
 !data/
 !data/dates_of_interest.csv
 !data/fips_to_name.csv
-!output/example_output_1000_days.png
-!output/example_output_1000_days.png_meta.json
-!output/base_model_initial_immune_distribution.png
-!output/base_model_initial_immune_distribution.png_meta.json
-!misc/scenarios_seip_model_diagram_3_11_24.png
+!img/scenarios_seip_model_diagram_3_11_24.png
 !data/spline_fits.csv
 !data/hospitalization-data/hospital_220213_220108.csv
 !output/example_output_summary_slide.png

diff --git a/README.md b/README.md
@@ -27,7 +27,7 @@ A fully dynamic suite of compartment models where any compartment may be easily
 ## Model Structure
 
 Subject to change, current transmission dynamics follow this basic model
-![](/misc/scenarios_seip_model_diagram_3_11_24.png)
+![](/img/scenarios_seip_model_diagram_3_11_24.png)
 
 ## Quick Start
 

diff --git a/config/config_inferer_covid.json b/config/config_inferer_covid.json
@@ -1,7 +1,6 @@
 {
     "SCENARIO_NAME": "test covid run for testing suite",
     "CONTACT_MATRIX_PATH": "data/demographic-data/contact_matrices",
-    "SAVE_PATH": "output/",
     "HOSPITALIZATION_DATA_PATH": "data/hospital_220213_220108.csv",
     "VACCINATION_MODEL_DATA": "data/spline_fits.csv",
     "SEASONAL_VACCINATION": false,

diff --git a/config/config_runner_covid.json b/config/config_runner_covid.json
@@ -1,7 +1,6 @@
 {
     "SCENARIO_NAME": "test covid run for testing suite",
     "CONTACT_MATRIX_PATH": "data/demographic-data/contact_matrices",
-    "SAVE_PATH": "output/",
     "HOSP_PATH": "data/hospital_220213_220108.csv",
     "VACCINATION_MODEL_DATA": "data/spline_fits.csv",
     "SEASONAL_VACCINATION": false,

diff --git a/.../scenarios_seip_model_diagram_3_11_24.png → img/scenarios_seip_model_diagram_3_11_24.png b/.../scenarios_seip_model_diagram_3_11_24.png → img/scenarios_seip_model_diagram_3_11_24.png
diff --git a/misc/scenarios_seip_model_diagram_cdc_blue.png b/misc/scenarios_seip_model_diagram_cdc_blue.png
diff --git a/misc/seir_model_v4_diagram.png b/misc/seir_model_v4_diagram.png
diff --git a/output/base_model_initial_immune_distribution.png b/output/base_model_initial_immune_distribution.png