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vitkl committed Jan 30, 2022
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26 changes: 26 additions & 0 deletions .github/ISSUE_TEMPLATE/bug_report.md
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---
name: Bug report
about: Cell2location doesn’t do what it should? Please help us fix it!
title: ''
labels: bug
assignees: ''
---

- [ ] I have confirmed this bug exists on the latest version of cell2location. See https://github.com/BayraktarLab/cell2location#installation
- [ ] I follow the instructions from the [scvi-tools tutorial](https://cell2location.readthedocs.io/en/latest/notebooks/cell2location_tutorial.html).

---

**Note**: Please read [this guide](https://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports) detailing how to provide the necessary information for us to reproduce your bug.


### Minimal code sample (that we can run without your data, using public data)

```python
# Your code here
```

```pytb
[Paste the error output produced by the above code here]
```

5 changes: 5 additions & 0 deletions .github/ISSUE_TEMPLATE/config.yml
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blank_issues_enabled: false
contact_links:
- name: Cell2location Community Discussions
url: https://github.com/BayraktarLab/cell2location/discussions
about: Ask how to solve your problem using cell2location.
10 changes: 10 additions & 0 deletions .github/ISSUE_TEMPLATE/enhancement-request.md
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---
name: Enhancement request
about: Anything you’d like to see in cell2location?
title: ''
labels: enhancement
assignees: ''
---

<!-- Please describe your feature you would like to see below: -->
...
41 changes: 41 additions & 0 deletions .github/ISSUE_TEMPLATE/question.md
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---
name: Usage Question
about: Ask how to solve your problem using cell2location.
title: ''
labels: question
assignees: ''
---

### Problem

<!-- Please describe your problem below: -->
...

- [ ] I follow the instructions from the [cell2location tutorial (using on scvi-tools)](https://cell2location.readthedocs.io/en/latest/notebooks/cell2location_tutorial.html).
- [ ] I have adjusted required hyperparameters to my dataset and tissue `N_cells_per_location` and `detection_alpha`.
- [ ] I have provided 10X reaction/inlet as `batch_key` for reference NB regression.
- [ ] I have checked [Cell2location Community Forum](https://github.com/BayraktarLab/cell2location/discussions), [scvi-tools forum](https://discourse.scvi-tools.org/) and did not find a solution


### Description of the data input and hyperparameters

<!-- Please briefly describe your : -->
...

<!-- Please briefly describe your spatial data: -->
...

#### Single cell reference data: number of cells, number of cell types, number of genes

<!-- Please add this info: -->
...

#### Single cell reference data: technology type (e.g. mix of 10X 3' and 5')

<!-- Please add this info: -->
...

#### Spatial data: number of locations numbers, technology type (e.g. Visium, ISS, Nanostring WTA)

<!-- Please add this info: -->
...

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