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@BayraktarLab

Bayraktar Group

We seek to explore the vast cellular diversity in the human brain using large-scale spatial transcriptomics, imaging and functional screens.

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  1. cell2location cell2location Public

    Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

    Python 321 58

  2. cell2fate cell2fate Public

    Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.

    Python 36 3

Repositories

Showing 7 of 7 repositories
  • cell2location Public

    Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

    BayraktarLab/cell2location’s past year of commit activity
    Python 321 Apache-2.0 58 100 (1 issue needs help) 13 Updated Oct 8, 2024
  • cell2fate Public

    Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.

    BayraktarLab/cell2fate’s past year of commit activity
    Python 36 Apache-2.0 3 3 0 Updated Sep 8, 2024
  • webatlas-pipeline Public Forked from haniffalab/webatlas-pipeline

    A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas

    BayraktarLab/webatlas-pipeline’s past year of commit activity
    Python 1 MIT 9 0 0 Updated Jun 26, 2023
  • image-station Public

    Image visualization in a browser with batteries included (mirroring from internal gitlab)

    BayraktarLab/image-station’s past year of commit activity
    Dockerfile 2 0 0 0 Updated Apr 6, 2023
  • feature_reg Public archive

    Feature based registration for fluorescence microscopy images

    BayraktarLab/feature_reg’s past year of commit activity
    Python 4 Apache-2.0 3 1 0 Updated May 25, 2022
  • opt_flow_reg Public archive

    Optical flow based registration for fluorescence microscopy images

    BayraktarLab/opt_flow_reg’s past year of commit activity
    Python 3 Apache-2.0 1 0 0 Updated May 16, 2022
  • CountCorrect Public

    CountCorrect: Background removal for Nanostring WTA data

    BayraktarLab/CountCorrect’s past year of commit activity
    Python 4 3 3 0 Updated Oct 19, 2021

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