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37 Open 92 Closed
37 Open 92 Closed
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Issues list

Issue with annotateWithFeatures
#214 opened Sep 25, 2024 by maf222
Error when installing the package
#213 opened Apr 29, 2024 by Simple53
ScoreMatrixBin not working in version 1.35.0
#212 opened Apr 1, 2024 by shuye2009
1
Error in GenomicRangesList(features = feat, flanks = flanks) : could not find function "GenomicRangesList"
#211 opened Mar 6, 2024 by danli349
2
Error in validObject(.Object) : invalid class "ScoreMatrix" object: superclass "mMatrix" not defined in the environment of the object's class
#210 opened Feb 22, 2024 by danli349
2
Error while anotaton od methilation data for both maping to genes and CPG island
#208 opened Dec 10, 2023 by Kaustav-93
Error during annotateWithGeneParts during methylation annotation.
#207 opened Nov 20, 2023 by desmodus1984
readTranscriptFeatures default parameters
#206 opened Dec 7, 2022 by TSolDour
BedGraph support
#204 opened Feb 9, 2022 by fgualdr
Site upstream of transcription start site annotated as intronic
#203 opened Jan 26, 2022 by pkothiyal
2
output annotation meta columns
#201 opened May 18, 2021 by shawpa
[Feature request] Keep all windows in the scoreMatrix
#197 opened Jan 27, 2021 by balwierz
2
ScoreMatrix returns matrix with wrong dimensions
#196 opened Jan 27, 2021 by balwierz
ScoreMatrix incorrectly removes valid windows
#195 opened Jan 27, 2021 by balwierz
2
readTranscriptFeatures with GTF
#192 opened Jun 10, 2020 by igordot
6
invalid class “ScoreMatrix” object
#191 opened Jun 9, 2020 by LiyanJi-code
1
Error message in getTargetAnnotationStats
#190 opened May 27, 2020 by abcosta
visualzation for RRBS data
#189 opened Apr 20, 2020 by alexyfyf
extracting gene coordinates from AnnotationByGeneParts object
#186 opened Jun 4, 2019 by ghost
2
readBed parsing failure
#185 opened Jun 4, 2019 by socanas
8
scoreMatrixBin allocates 415 GB of RAM (1000 bins, 55,000 regions)
#184 opened May 18, 2019 by balwierz
2
Allow [ on ScoreMatrixList by name
#182 opened Mar 12, 2019 by balwierz
5
Bed file reading error with readTranscriptFeatures()
#181 opened Feb 13, 2019 by gladiagit
7
Integrate DelayedArray framework into genomation
#180 opened Jan 7, 2019 by katwre
list of score matrices not printed out correctly to terminal
#178 opened Jul 4, 2018 by balwierz
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