This repository has been archived by the owner on Jan 10, 2024. It is now read-only.
Update docs to reflect current way we comput the viscous stress #251
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| name: PeleLM-CI | |
| on: | |
| push: | |
| branches: [development] | |
| pull_request: | |
| branches: [development] | |
| jobs: | |
| #Formatting: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: DoozyX/[email protected] | |
| # with: | |
| # source: './Source ./Exec' | |
| # exclude: '.' | |
| # extensions: 'H,h,cpp' | |
| # clangFormatVersion: 11 | |
| CMake: | |
| #needs: Formatting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| # Not easy to get fortran found by CMake on MacOS here | |
| #os: [ubuntu-latest, macos-latest] | |
| os: [ubuntu-latest] | |
| include: | |
| #- os: macos-latest | |
| # install_deps: brew install open-mpi automake | |
| # comp: llvm | |
| # procs: $(sysctl -n hw.ncpu) | |
| # mpipreflags: -DMPIEXEC_PREFLAGS:STRING=--oversubscribe | |
| - os: ubuntu-latest | |
| install_deps: sudo apt-get install mpich libmpich-dev | |
| comp: gnu | |
| procs: $(nproc) | |
| mpipreflags: | |
| steps: | |
| - name: Cancel previous runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{github.token}} | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Setup | |
| run: | | |
| echo "NPROCS=${{matrix.procs}}" >> $GITHUB_ENV | |
| cmake -E make_directory ${{runner.workspace}}/deps | |
| - name: Dependencies | |
| run: | | |
| # Install MPI | |
| ${{matrix.install_deps}} | |
| ## Install MetaPhysicL | |
| #cd ${{runner.workspace}}/deps | |
| #git clone --recursive https://github.com/roystgnr/MetaPhysicL.git ${{runner.workspace}}/deps/MetaPhysicL | |
| #cd ${{runner.workspace}}/deps/MetaPhysicL | |
| #./bootstrap | |
| #./configure --prefix="${{runner.workspace}}/deps/install/MetaPhysicL" | |
| #make -j ${{env.NPROCS}} | |
| #make install | |
| ## Install MASA | |
| #cd ${{runner.workspace}}/deps | |
| #git clone --recursive https://github.com/manufactured-solutions/MASA.git ${{runner.workspace}}/deps/MASA | |
| #cd ${{runner.workspace}}/deps/MASA | |
| #./bootstrap | |
| #./configure CXX='mpicxx -std=c++11' CC=mpicc \ | |
| # METAPHYSICL_DIR="${{runner.workspace}}/deps/install/MetaPhysicL" \ | |
| # --prefix="${{runner.workspace}}/deps/install/MASA" | |
| #make -j ${{env.NPROCS}} | |
| #make install | |
| # Install Python packages | |
| python -m pip install --upgrade pip | |
| pip install nose numpy pandas | |
| - name: Configure | |
| run: | | |
| for DIM in 3; do \ | |
| if [ "${DIM}" != '3' ]; then WARNINGS=OFF; else WARNINGS=ON; fi; \ | |
| printf "\n-------- Configuring ${DIM}D --------\n"; \ | |
| cmake -B${{runner.workspace}}/build-${DIM}d-${{matrix.os}} \ | |
| -DCMAKE_INSTALL_PREFIX:PATH=${{runner.workspace}}/install \ | |
| -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo \ | |
| -DPELELM_DIM:STRING=${DIM} \ | |
| -DPELELM_ENABLE_MPI:BOOL=ON \ | |
| ${{matrix.mpipreflags}} \ | |
| -DPELELM_ENABLE_TESTS:BOOL=ON \ | |
| -DPELELM_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \ | |
| -DPELELM_ENABLE_MASA:BOOL=OFF \ | |
| -DPELELM_ENABLE_ALL_WARNINGS:BOOL=${WARNINGS} \ | |
| ${{github.workspace}}; \ | |
| done | |
| - name: Build | |
| run: | | |
| for DIM in 3; do \ | |
| printf "\n-------- Building ${DIM}D --------\n"; \ | |
| cmake --build ${{runner.workspace}}/build-${DIM}d-${{matrix.os}} \ | |
| --parallel ${{env.NPROCS}} 2>&1 | tee -a ${{runner.workspace}}/build-output.txt; \ | |
| done | |
| - name: Report | |
| run: | | |
| #echo "::add-matcher::.github/problem-matchers/gcc.json" | |
| cat ${{runner.workspace}}/build-output.txt | egrep "warning:|error:" | sort | uniq | sort -nr | \ | |
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' | |
| ##- name: Test | |
| ## run: | | |
| ## for DIM in 3; do \ | |
| ## printf "\n-------- Testing ${DIM}D --------\n"; \ | |
| ## cd ${{runner.workspace}}/build-${DIM}d-${{matrix.os}}; \ | |
| ## ctest -j ${{env.NPROCS}} -LE no-ci --output-on-failure; \ | |
| ## done | |
| #GNUmake: | |
| # needs: Formatting | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Cancel previous runs | |
| # uses: styfle/[email protected] | |
| # with: | |
| # access_token: ${{github.token}} | |
| # - uses: actions/checkout@v2 | |
| # with: | |
| # submodules: true | |
| # - name: Setup | |
| # run: | | |
| # echo "NPROCS=$(nproc)" >> $GITHUB_ENV | |
| # printf "CC=gcc-8\nCXX=g++-8\nFC=gfortran-8\nF90=gfortran-8" >> ./Submodules/AMReX/Tools/GNUMake/Make.local | |
| # - name: PMF debug make | |
| # working-directory: ./ExecCpp/RegTests/PMF | |
| # run: make -j ${{env.NPROCS}} COMP=gnu USE_MPI=FALSE DEBUG=TRUE | |
| # - name: PMF debug test | |
| # working-directory: ./ExecCpp/RegTests/PMF | |
| # run: ./Pele3d.gnu.DEBUG.ex tests/pmf-1/pmf-1.i max_step=2 amr.plot_files_output=0 amr.checkpoint_files_output=0 | |
| # - name: EB debug build | |
| # working-directory: ./ExecCpp/RegTests/EB-C10 | |
| # run: make -j ${{env.NPROCS}} COMP=gnu USE_MPI=FALSE DEBUG=TRUE | |
| # - name: EB debug test | |
| # working-directory: ./ExecCpp/RegTests/EB-C10 | |
| # run: ./Pele3d.gnu.DEBUG.ex tests/eb-c10/eb-c10.i max_step=2 amr.plot_files_output=0 amr.checkpoint_files_output=0 | |
| #CUDA: | |
| # #needs: Formatting | |
| # runs-on: ubuntu-latest | |
| # name: CUDA v${{matrix.cuda_ver}} | |
| # strategy: | |
| # matrix: | |
| # #cuda_pkg: [11-1, 10-2] | |
| # cuda_pkg: [11-1] | |
| # include: | |
| # - cuda_ver: "11.1" | |
| # cuda_pkg: 11-1 | |
| # cuda_extra: libcurand-dev-11-1 cuda-cupti-dev-11-1 libcusparse-dev-11-1 libcusolver-dev-11-1 libcublas-dev-11-1 | |
| # #- cuda_ver: "10.2" | |
| # # cuda_pkg: 10-2 | |
| # # cuda_extra: cuda-curand-dev-10-2 cuda-cupti-dev-10-2 | |
| # steps: | |
| # - name: Cancel previous runs | |
| # uses: styfle/[email protected] | |
| # with: | |
| # access_token: ${{github.token}} | |
| # - uses: actions/checkout@v2 | |
| # with: | |
| # submodules: true | |
| # - name: Dependencies | |
| # run: | | |
| # export DEBIAN_FRONTEND=noninteractive | |
| # wget -q -O - https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/7fa2af80.pub | sudo apt-key add - | |
| # echo "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64 /" | sudo tee /etc/apt/sources.list.d/cuda.list | |
| # echo "deb https://developer.download.nvidia.com/compute/machine-learning/repos/ubuntu1804/x86_64 /" | sudo tee /etc/apt/sources.list.d/nvidia-ml.list | |
| # sudo apt-get update | |
| # sudo apt-get install -y --no-install-recommends \ | |
| # libopenmpi-dev cuda-command-line-tools-${{matrix.cuda_pkg}} \ | |
| # cuda-compiler-${{matrix.cuda_pkg}} cuda-minimal-build-${{matrix.cuda_pkg}} \ | |
| # cuda-nvml-dev-${{matrix.cuda_pkg}} cuda-nvtx-${{matrix.cuda_pkg}} ${{matrix.cuda_extra}} | |
| # - name: Configure | |
| # run: | | |
| # echo "NPROCS=$(nproc)" >> $GITHUB_ENV | |
| # export PATH=/usr/local/nvidia/bin:/usr/local/cuda-${{matrix.cuda_ver}}/bin:${PATH} | |
| # export LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda-${{matrix.cuda_ver}}/lib:${LD_LIBRARY_PATH} | |
| # cmake -Bbuild-${{matrix.cuda_pkg}} \ | |
| # -DPELELM_ENABLE_MPI=OFF \ | |
| # -DPELELM_ENABLE_CUDA=ON \ | |
| # -DAMReX_CUDA_ERROR_CAPTURE_THIS:BOOL=ON \ | |
| # -DAMReX_CUDA_ARCH=Volta \ | |
| # ${{github.workspace}} | |
| # - name: Build | |
| # run: cmake --build build-${{matrix.cuda_pkg}} --parallel ${{env.NPROCS}} | |
| cppcheck: | |
| #needs: Formatting | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Cancel previous runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{github.token}} | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Dependencies | |
| run: sudo apt-get install -y cppcheck | |
| - name: Configure | |
| run: | | |
| cmake -B${{runner.workspace}}/build-cppcheck \ | |
| -DPELELM_ENABLE_MPI:BOOL=OFF \ | |
| -DPELELM_ENABLE_TESTS:BOOL=ON \ | |
| -DPELELM_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \ | |
| -DPELELM_ENABLE_MASA:BOOL=OFF \ | |
| -DPELELM_ENABLE_CPPCHECK:BOOL=ON \ | |
| ${{github.workspace}} | |
| - name: Check | |
| working-directory: ${{runner.workspace}}/build-cppcheck | |
| run: make cppcheck | |
| - name: Full report | |
| working-directory: ${{runner.workspace}}/build-cppcheck/cppcheck | |
| run: cat cppcheck-full-report.txt | |
| - name: Short report | |
| working-directory: ${{runner.workspace}}/build-cppcheck | |
| run: | | |
| #echo "::add-matcher::.github/problem-matchers/cppcheck.json" | |
| cat cppcheck-warnings.txt | |
| clang-tidy: | |
| #needs: Formatting | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Cancel previous runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{github.token}} | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get install -y clang-tidy-10 | |
| sudo update-alternatives --install /usr/bin/clang-tidy clang-tidy /usr/bin/clang-tidy-10 100 | |
| - name: Configure | |
| run: | | |
| echo "NPROCS=$(nproc)" >> $GITHUB_ENV | |
| cmake -B${{runner.workspace}}/build-clang-tidy \ | |
| -DCMAKE_CXX_COMPILER:STRING=clang++ \ | |
| -DCMAKE_C_COMPILER:STRING=clang \ | |
| -DCMAKE_Fortran_COMPILER:STRING=gfortran \ | |
| -DPELELM_ENABLE_MPI:BOOL=OFF \ | |
| -DPELELM_ENABLE_TESTS:BOOL=ON \ | |
| -DPELELM_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \ | |
| -DPELELM_ENABLE_MASA:BOOL=OFF \ | |
| -DPELELM_ENABLE_CLANG_TIDY:BOOL=ON \ | |
| ${{github.workspace}} | |
| - name: Check | |
| working-directory: ${{runner.workspace}}/build-clang-tidy | |
| run: | | |
| cmake --build . --parallel ${{env.NPROCS}} 2> clang-tidy-full-report.txt | |
| cat clang-tidy-full-report.txt | grep "warning:" | \ | |
| egrep -v "amrex|sundials|PelePhysics|IAMR|AMReX-Hydro|googletest" | sort | uniq | sort -nr | \ | |
| awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > clang-tidy-warnings.txt | |
| - name: Full report | |
| working-directory: ${{runner.workspace}}/build-clang-tidy | |
| run: cat clang-tidy-full-report.txt | |
| - name: Short report | |
| working-directory: ${{runner.workspace}}/build-clang-tidy | |
| run: | | |
| #echo "::add-matcher::.github/problem-matchers/gcc.json" | |
| cat clang-tidy-warnings.txt |