ci.yml

name: PeleLM-CI

on:
  push:
    branches: [development]
  pull_request:
    branches: [development]

jobs:
  #Formatting:
  #  runs-on: ubuntu-latest
  #  steps:
  #  - uses: actions/checkout@v2
  #  - uses: DoozyX/clang-format-lint-action@v0.11
  #    with:
  #      source: './Source ./Exec'
  #      exclude: '.'
  #      extensions: 'H,h,cpp'
  #      clangFormatVersion: 11
  CMake:
    #needs: Formatting
    runs-on: ${{matrix.os}}
    strategy:
      matrix:
        # Not easy to get fortran found by CMake on MacOS here
        #os: [ubuntu-latest, macos-latest]
        os: [ubuntu-latest]
        include:
          #- os: macos-latest
          #  install_deps: brew install open-mpi automake
          #  comp: llvm
          #  procs: $(sysctl -n hw.ncpu)
          #  mpipreflags: -DMPIEXEC_PREFLAGS:STRING=--oversubscribe
          - os: ubuntu-latest
            install_deps: sudo apt-get install mpich libmpich-dev
            comp: gnu
            procs: $(nproc)
            mpipreflags:
    steps:
      - name: Cancel previous runs
        uses: styfle/cancel-workflow-action@0.6.0
        with:
          access_token: ${{github.token}}
      - uses: actions/checkout@v2
        with:
          submodules: true
      - name: Python
        uses: actions/setup-python@v2
        with:
          python-version: '3.x'
      - name: Setup
        run: |
          echo "NPROCS=${{matrix.procs}}" >> $GITHUB_ENV
          cmake -E make_directory ${{runner.workspace}}/deps
      - name: Dependencies
        run: |
          # Install MPI
          ${{matrix.install_deps}}
          ## Install MetaPhysicL
          #cd ${{runner.workspace}}/deps
          #git clone --recursive https://github.com/roystgnr/MetaPhysicL.git ${{runner.workspace}}/deps/MetaPhysicL
          #cd ${{runner.workspace}}/deps/MetaPhysicL
          #./bootstrap
          #./configure --prefix="${{runner.workspace}}/deps/install/MetaPhysicL"
          #make -j ${{env.NPROCS}}
          #make install
          ## Install MASA
          #cd ${{runner.workspace}}/deps
          #git clone --recursive https://github.com/manufactured-solutions/MASA.git ${{runner.workspace}}/deps/MASA
          #cd ${{runner.workspace}}/deps/MASA
          #./bootstrap
          #./configure CXX='mpicxx -std=c++11' CC=mpicc \
          #  METAPHYSICL_DIR="${{runner.workspace}}/deps/install/MetaPhysicL" \
          #  --prefix="${{runner.workspace}}/deps/install/MASA"
          #make -j ${{env.NPROCS}}
          #make install
          # Install Python packages
          python -m pip install --upgrade pip
          pip install nose numpy pandas
      - name: Configure
        run: |
          for DIM in 3; do \
            if [ "${DIM}" != '3' ]; then WARNINGS=OFF; else WARNINGS=ON; fi; \
            printf "\n-------- Configuring ${DIM}D --------\n"; \
            cmake -B${{runner.workspace}}/build-${DIM}d-${{matrix.os}} \
            -DCMAKE_INSTALL_PREFIX:PATH=${{runner.workspace}}/install \
            -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo \
            -DPELELM_DIM:STRING=${DIM} \
            -DPELELM_ENABLE_MPI:BOOL=ON \
            ${{matrix.mpipreflags}} \
            -DPELELM_ENABLE_TESTS:BOOL=ON \
            -DPELELM_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
            -DPELELM_ENABLE_MASA:BOOL=OFF \
            -DPELELM_ENABLE_ALL_WARNINGS:BOOL=${WARNINGS} \
            ${{github.workspace}}; \
          done
      - name: Build
        run: |
          for DIM in 3; do \
            printf "\n-------- Building ${DIM}D --------\n"; \
            cmake --build ${{runner.workspace}}/build-${DIM}d-${{matrix.os}} \
              --parallel ${{env.NPROCS}} 2>&1 | tee -a ${{runner.workspace}}/build-output.txt; \
          done
      - name: Report
        run: |
          #echo "::add-matcher::.github/problem-matchers/gcc.json"
          cat ${{runner.workspace}}/build-output.txt | egrep "warning:|error:" | sort | uniq | sort -nr | \
            awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}'
      ##- name: Test
      ##  run: |
      ##    for DIM in 3; do \
      ##      printf "\n-------- Testing ${DIM}D --------\n"; \
      ##      cd ${{runner.workspace}}/build-${DIM}d-${{matrix.os}}; \
      ##      ctest -j ${{env.NPROCS}} -LE no-ci  --output-on-failure; \
      ##    done
  #GNUmake:
  #  needs: Formatting
  #  runs-on: ubuntu-latest
  #  steps:
  #    - name: Cancel previous runs
  #      uses: styfle/cancel-workflow-action@0.6.0
  #      with:
  #        access_token: ${{github.token}}
  #    - uses: actions/checkout@v2
  #      with:
  #        submodules: true
  #    - name: Setup
  #      run: |
  #        echo "NPROCS=$(nproc)" >> $GITHUB_ENV
  #        printf "CC=gcc-8\nCXX=g++-8\nFC=gfortran-8\nF90=gfortran-8" >> ./Submodules/AMReX/Tools/GNUMake/Make.local
  #    - name: PMF debug make
  #      working-directory: ./ExecCpp/RegTests/PMF
  #      run: make -j ${{env.NPROCS}} COMP=gnu USE_MPI=FALSE DEBUG=TRUE
  #    - name: PMF debug test
  #      working-directory: ./ExecCpp/RegTests/PMF
  #      run: ./Pele3d.gnu.DEBUG.ex tests/pmf-1/pmf-1.i max_step=2 amr.plot_files_output=0 amr.checkpoint_files_output=0
  #    - name: EB debug build
  #      working-directory: ./ExecCpp/RegTests/EB-C10
  #      run: make -j ${{env.NPROCS}} COMP=gnu USE_MPI=FALSE DEBUG=TRUE
  #    - name: EB debug test
  #      working-directory: ./ExecCpp/RegTests/EB-C10
  #      run: ./Pele3d.gnu.DEBUG.ex tests/eb-c10/eb-c10.i max_step=2 amr.plot_files_output=0 amr.checkpoint_files_output=0
  #CUDA:
  #  #needs: Formatting
  #  runs-on: ubuntu-latest
  #  name: CUDA v${{matrix.cuda_ver}}
  #  strategy:
  #    matrix:
  #      #cuda_pkg: [11-1, 10-2]
  #      cuda_pkg: [11-1]
  #      include:
  #        - cuda_ver: "11.1"
  #          cuda_pkg: 11-1
  #          cuda_extra: libcurand-dev-11-1 cuda-cupti-dev-11-1 libcusparse-dev-11-1 libcusolver-dev-11-1 libcublas-dev-11-1
  #        #- cuda_ver: "10.2"
  #        #  cuda_pkg: 10-2
  #        #  cuda_extra: cuda-curand-dev-10-2 cuda-cupti-dev-10-2
  #  steps:
  #    - name: Cancel previous runs
  #      uses: styfle/cancel-workflow-action@0.6.0
  #      with:
  #        access_token: ${{github.token}}
  #    - uses: actions/checkout@v2
  #      with:
  #        submodules: true
  #    - name: Dependencies
  #      run: |
  #        export DEBIAN_FRONTEND=noninteractive
  #        wget -q -O - https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/7fa2af80.pub | sudo apt-key add -
  #        echo "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64 /" | sudo tee /etc/apt/sources.list.d/cuda.list
  #        echo "deb https://developer.download.nvidia.com/compute/machine-learning/repos/ubuntu1804/x86_64 /" | sudo tee /etc/apt/sources.list.d/nvidia-ml.list
  #        sudo apt-get update
  #        sudo apt-get install -y --no-install-recommends \
  #            libopenmpi-dev cuda-command-line-tools-${{matrix.cuda_pkg}} \
  #            cuda-compiler-${{matrix.cuda_pkg}} cuda-minimal-build-${{matrix.cuda_pkg}} \
  #            cuda-nvml-dev-${{matrix.cuda_pkg}} cuda-nvtx-${{matrix.cuda_pkg}} ${{matrix.cuda_extra}}
  #    - name: Configure
  #      run: |
  #        echo "NPROCS=$(nproc)" >> $GITHUB_ENV
  #        export PATH=/usr/local/nvidia/bin:/usr/local/cuda-${{matrix.cuda_ver}}/bin:${PATH}
  #        export LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda-${{matrix.cuda_ver}}/lib:${LD_LIBRARY_PATH}
  #        cmake -Bbuild-${{matrix.cuda_pkg}} \
  #          -DPELELM_ENABLE_MPI=OFF \
  #          -DPELELM_ENABLE_CUDA=ON \
  #          -DAMReX_CUDA_ERROR_CAPTURE_THIS:BOOL=ON \
  #          -DAMReX_CUDA_ARCH=Volta \
  #          ${{github.workspace}}
  #    - name: Build
  #      run: cmake --build build-${{matrix.cuda_pkg}} --parallel ${{env.NPROCS}}
  cppcheck:
    #needs: Formatting
    runs-on: ubuntu-20.04
    steps:
      - name: Cancel previous runs
        uses: styfle/cancel-workflow-action@0.6.0
        with:
          access_token: ${{github.token}}
      - uses: actions/checkout@v2
        with:
          submodules: true
      - name: Dependencies
        run: sudo apt-get install -y cppcheck
      - name: Configure
        run: |
          cmake -B${{runner.workspace}}/build-cppcheck \
          -DPELELM_ENABLE_MPI:BOOL=OFF \
          -DPELELM_ENABLE_TESTS:BOOL=ON \
          -DPELELM_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
          -DPELELM_ENABLE_MASA:BOOL=OFF \
          -DPELELM_ENABLE_CPPCHECK:BOOL=ON \
          ${{github.workspace}}
      - name: Check
        working-directory: ${{runner.workspace}}/build-cppcheck
        run: make cppcheck
      - name: Full report
        working-directory: ${{runner.workspace}}/build-cppcheck/cppcheck
        run: cat cppcheck-full-report.txt
      - name: Short report
        working-directory: ${{runner.workspace}}/build-cppcheck
        run: |
          #echo "::add-matcher::.github/problem-matchers/cppcheck.json"
          cat cppcheck-warnings.txt
  clang-tidy:
    #needs: Formatting
    runs-on: ubuntu-20.04
    steps:
      - name: Cancel previous runs
        uses: styfle/cancel-workflow-action@0.6.0
        with:
          access_token: ${{github.token}}
      - uses: actions/checkout@v2
        with:
          submodules: true
      - name: Dependencies
        run: |
          sudo apt-get install -y clang-tidy-10
          sudo update-alternatives --install /usr/bin/clang-tidy clang-tidy /usr/bin/clang-tidy-10 100
      - name: Configure
        run: |
          echo "NPROCS=$(nproc)" >> $GITHUB_ENV
          cmake -B${{runner.workspace}}/build-clang-tidy \
          -DCMAKE_CXX_COMPILER:STRING=clang++ \
          -DCMAKE_C_COMPILER:STRING=clang \
          -DCMAKE_Fortran_COMPILER:STRING=gfortran \
          -DPELELM_ENABLE_MPI:BOOL=OFF \
          -DPELELM_ENABLE_TESTS:BOOL=ON \
          -DPELELM_ENABLE_FCOMPARE_FOR_TESTS:BOOL=OFF \
          -DPELELM_ENABLE_MASA:BOOL=OFF \
          -DPELELM_ENABLE_CLANG_TIDY:BOOL=ON \
          ${{github.workspace}}
      - name: Check
        working-directory: ${{runner.workspace}}/build-clang-tidy
        run: |
          cmake --build . --parallel ${{env.NPROCS}} 2> clang-tidy-full-report.txt
          cat clang-tidy-full-report.txt | grep "warning:" | \
            egrep -v "amrex|sundials|PelePhysics|IAMR|AMReX-Hydro|googletest" | sort | uniq | sort -nr | \
            awk 'BEGIN{i=0}{print $0}{i++}END{print "Warnings: "i}' > clang-tidy-warnings.txt
      - name: Full report
        working-directory: ${{runner.workspace}}/build-clang-tidy
        run: cat clang-tidy-full-report.txt
      - name: Short report
        working-directory: ${{runner.workspace}}/build-clang-tidy
        run: |
          #echo "::add-matcher::.github/problem-matchers/gcc.json"
          cat clang-tidy-warnings.txt