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takes folder of paired end fastq files and generates a single sam file

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zuzerdhoondia/py_bowtie_fastq_2_sam

 
 

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py_bowtie_fastq_2_sam

Currently the script will look for the bowtie2 index on the Fred Hutchinson Cancer Research Center servers

Please alter the paths for the index files. This must be done for both the data_species and the spike_species

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takes folder of paired end fastq files and generates a single sam file

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  • Python 100.0%