ranking

zqfang · Oct 22, 2023 · 1cc287e · 1cc287e
1 parent 1a29be9
commit 1cc287e
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diff --git a/gseapy/gsva.py b/gseapy/gsva.py
@@ -158,5 +158,5 @@ def run(self):
             self._threads,
         )
         self.to_df(gsum.summaries, gmt, df, gsum.indices)
-        self.ranking = gsum.indices
+        self.ranking = [rnk[ind] for rnk, ind in zip(gsum.rankings, gsum.indices)]
         self._logger.info("Done")
diff --git a/src/gsva.rs b/src/gsva.rs
@@ -325,6 +325,7 @@ pub fn gsva(
     let mut gsea = GSEAResult::new(tau, max_size, min_size, 0, 0);
     gsea.summaries = summ;
     gsea.indices = sort_idxs;
+    gsea.rankings = mat_score;
     return gsea;
 
 }