update

.github/workflows/docker-arm.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     permissions:
       packages: write
-      contents: read
+      contents: write
     steps:
 
       - name: Set up QEMU

armrocker/Dockerfile

@@ -1,15 +1,6 @@
 FROM yufree/xcmsrocker:arm
 MAINTAINER "Miao Yu" [email protected]
 RUN apt-get update \
-  && apt-get install -y --no-install-recommends \
-    libnetcdf-dev \
-    ## rgl support
-    libgl1-mesa-dev \
-    libglu1-mesa-dev \
-    ## tcl tk support
-    tcl8.6-dev \
-    tk8.6-dev \
-  && rm -rf /var/lib/apt/lists/* \
   && R -e "BiocManager::install(c('xcms','IPO','sva','WGCNA', 'KEGGREST', 'KEGGgraph', 'SSPA','Rdisop', 'qvalue', 'GlobalAncova', 'globaltest', 'siggenes', 'Rgraphviz','ChemmineR','metaMS', 'msPurity', 'mixOmics', 'fgsea', 'Rita','lumi','CompoundDb','MetaboAnnotation','MsBackendMgf','MsBackendMsp','genefilter','metapone'))" \
   && R -e "install.packages(c('Autotuner','XMLSchema','SSOAP','metfRag','xMSannotator'), repos = 'https://yufree.github.io/drat',type = 'source')" \
   && install2.r --error  --skipinstalled \

armrocker0/Dockerfile

@@ -20,7 +20,14 @@ RUN apt-get update \
     libssh2-1-dev \
     libxtst6 \
     libcurl4-openssl-dev \
-    unixodbc-dev 
+    unixodbc-dev \
+    libnetcdf-dev \
+    ## rgl support
+    libgl1-mesa-dev \
+    libglu1-mesa-dev \
+    ## tcl tk support
+    tcl8.6-dev \
+    tk8.6-dev
 
 RUN install2.r --error --skipinstalled \
     devtools \