update arm

armrocker/Dockerfile

@@ -1,37 +1,5 @@
-FROM rocker/rstudio:latest
+FROM yufree/xcmsrocker:arm0
 MAINTAINER "Miao Yu" [email protected]
-RUN /rocker_scripts/install_pandoc.sh
-
-RUN apt-get update \
-  && apt-get install -y --no-install-recommends \
-    libharfbuzz-dev \
-    libfribidi-dev \
-    libfreetype6-dev \
-    libpng-dev \
-    libtiff5-dev \
-    libjpeg-dev \
-    libxml2-dev \
-    libcairo2-dev \
-    libgit2-dev \
-    default-libmysqlclient-dev \
-    libpq-dev \
-    libsasl2-dev \
-    libsqlite3-dev \
-    libssh2-1-dev \
-    libxtst6 \
-    libcurl4-openssl-dev \
-    unixodbc-dev 
-
-RUN install2.r --error --skipinstalled \
-    devtools \
-    rmarkdown \
-    BiocManager \
-    vroom \
-    gert
-
-RUN rm -rf /var/lib/apt/lists/*
-RUN rm -rf /tmp/downloaded_packages
-
 RUN apt-get update \
   && apt-get install -y --no-install-recommends \
     libnetcdf-dev \

armrocker0/Dockerfile

@@ -1,47 +1,33 @@
-FROM yufree/xcmsrocker:arm0
+FROM rocker/rstudio:latest
 MAINTAINER "Miao Yu" [email protected]
+RUN /rocker_scripts/install_pandoc.sh
+
 RUN apt-get update \
   && apt-get install -y --no-install-recommends \
-    libnetcdf-dev \
-    ## rgl support
-    libgl1-mesa-dev \
-    libglu1-mesa-dev \
-    ## tcl tk support
-    tcl8.6-dev \
-    tk8.6-dev \
-  && rm -rf /var/lib/apt/lists/* \
-  && R -e "BiocManager::install(c('xcms','IPO','sva','WGCNA', 'KEGGREST', 'KEGGgraph', 'SSPA','Rdisop', 'qvalue', 'GlobalAncova', 'globaltest', 'siggenes', 'Rgraphviz','ChemmineR','metaMS', 'msPurity', 'mixOmics', 'fgsea', 'Rita','lumi','CompoundDb','MetaboAnnotation','MsBackendMgf','MsBackendMsp','genefilter','metapone'))" \
-  && R -e "install.packages(c('Autotuner','XMLSchema','SSOAP','metfRag','xMSannotator'), repos = 'https://yufree.github.io/drat',type = 'source')" \
-  && install2.r --error  --skipinstalled \
-    ChemoSpec \
-    webchem \
-    InterpretMSSpectrum \
-    tcltk2 \
-    plotly \
-    caret \ 
-    caretEnsemble \
-    pROC \
-    gWQS \
-    UpSetR \
-    multcomp \
-    isva \ 
-    h2o \
-    RAMClustR \
-  && installGithub.r \
-    rwehrens/ChemometricsWithR \
-    rwehrens/BatchCorrMetabolomics \
-    KechrisLab/MSPrep \
-    yufree/MetDIA \
-    c-ruttkies/MetFragR/metfRag \
-    ropensci/rfigshare \
-    Aurametrix/R/GRAPH/MetabNet \
-    kuppal2/xMWAS \
-    yufree/x13cms \
-    aberHRML/classyfireR \
-    yufree/enviGCMS \
-    yufree/pmd \
-    yufree/mzrtsim \
-    yufree/rmwf \
-    lifs-tools/rmzTab-m \
-   && rm -rf /tmp/downloaded_packages \
-   && strip /usr/local/lib/R/site-library/*/libs/*.so
+    libharfbuzz-dev \
+    libfribidi-dev \
+    libfreetype6-dev \
+    libpng-dev \
+    libtiff5-dev \
+    libjpeg-dev \
+    libxml2-dev \
+    libcairo2-dev \
+    libgit2-dev \
+    default-libmysqlclient-dev \
+    libpq-dev \
+    libsasl2-dev \
+    libsqlite3-dev \
+    libssh2-1-dev \
+    libxtst6 \
+    libcurl4-openssl-dev \
+    unixodbc-dev 
+
+RUN install2.r --error --skipinstalled \
+    devtools \
+    rmarkdown \
+    BiocManager \
+    vroom \
+    gert
+
+RUN rm -rf /var/lib/apt/lists/*
+RUN rm -rf /tmp/downloaded_packages