Update example

wwu-mmll · Aug 5, 2024 · 849be64 · 849be64
1 parent 6ce4a3d
commit 849be64
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/examples/example_slurm.sh b/examples/example_slurm.sh
@@ -6,7 +6,7 @@
 #SBATCH --partition normal
 #SBATCH --mem-per-cpu=2G
 #SBATCH --time=0-10:00:00
-#SBATCH --array=1-1000
+#SBATCH --array=1-2
 
 # add python
 module load palma/2021a
@@ -16,4 +16,5 @@ module load Miniconda3
 eval "$(conda shell.bash hook)"
 conda activate cpm
 
-python cpm_analysis.py --results_directory "./tmp/slurm" --data_directory "./simulated_data/" --config_file "./config.pkl" perm_run $SLURM_ARRAY_TASK_ID
+export PYTHONPATH=$PYTHONPATH:/scratch/tmp/wintern/cpm/cpm_python
+python ../cpm/cpm_analysis.py --results-directory "/scratch/tmp/wintern/cpm/results/" --data-directory "./simulated_data/" --config-file "./config.pkl" --perm-run $SLURM_ARRAY_TASK_ID