Add option to save configuration to pickle file

wwu-mmll · Aug 2, 2024 · 012160e · 012160e
1 parent b6bee24
commit 012160e
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/examples/config.pkl b/examples/config.pkl
diff --git a/examples/example_slurm.sh b/examples/example_slurm.sh
@@ -16,4 +16,4 @@ module load Miniconda3
 eval "$(conda shell.bash hook)"
 conda activate cpm
 
-python cpm_analysis.py --results_directory "" --data_directory "" --config_file "" perm_run $SLURM_ARRAY_TASK_ID
+python cpm_analysis.py --results_directory "./tmp/slurm" --data_directory "./simulated_data/" --config_file "./config.pkl" perm_run $SLURM_ARRAY_TASK_ID
diff --git a/examples/save_config.py b/examples/save_config.py
@@ -20,7 +20,7 @@
                     cv_edge_selection=ShuffleSplit(n_splits=1, test_size=0.2, random_state=42),
                     add_edge_filter=True,
                     n_permutations=100)
-cpm.save_configuration(config_filename='./tmp/config.pkl')
+cpm.save_configuration(config_filename='./config.pkl')
 
 cpm_remote = CPMRegression(results_directory='./tmp/example_simulated_data2')
 cpm_remote.load_configuration(results_directory='./tmp/example_simulated_data3',