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295 followers · 49 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Galaxy BrainAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Galaxy BrainAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Highlights

  • Pro

Organizations

@bioconda @centre-for-microbiome-research @emerge-bii

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  1. CoverM CoverM Public

    Read coverage calculator for metagenomics

    Rust 312 31

  2. kingfisher-download kingfisher-download Public

    Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

    Python 251 38

  3. singlem singlem Public

    Novelty-inclusive microbial community profiling of shotgun metagenomes

    Python 137 18

  4. rhysnewell/Lorikeet rhysnewell/Lorikeet Public

    Strain resolver for metagenomics

    Rust 70 9

  5. rhysnewell/aviary rhysnewell/aviary Public

    A hybrid assembly and MAG recovery pipeline (and more!)

    Python 85 13

  6. AroneyS/binchicken AroneyS/binchicken Public

    Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

    Python 35 2