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change instances of "gene cassette" to "gene cluster"
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alexismhill3 authored Aug 19, 2021
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[![Documentation Status](https://readthedocs.org/projects/opfi/badge/?version=latest)](https://opfi.readthedocs.io/en/latest/?badge=latest)

A python package for discovery, annotation, and analysis of gene cassettes in genomics or metagenomics datasets.
A python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics datasets.

## Requirements

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## Gene Finder

Gene Finder iteratively executes homology searches to identify gene cassettes of interest. Below is an example script that sets up a search for putative CRISPR-Cas systems in the Rippkaea orientalis PCC 8802 (cyanobacteria) genome. Data inputs are provided in the Opfi tutorial (`tutorials/tutorial.ipynb`).
Gene Finder iteratively executes homology searches to identify gene clusters of interest. Below is an example script that sets up a search for putative CRISPR-Cas systems in the Rippkaea orientalis PCC 8802 (cyanobacteria) genome. Data inputs are provided in the Opfi tutorial (`tutorials/tutorial.ipynb`).

```python
from gene_finder.pipeline import Pipeline
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