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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 70 33

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 129 28

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 31 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 6

Repositories

Showing 10 of 107 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 5 0 Updated Jan 9, 2025
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 9, 2025
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 52 5 11 1 Updated Jan 9, 2025
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 31 13 5 0 Updated Jan 8, 2025
  • cMDClick Public
    waldronlab/cMDClick’s past year of commit activity
    R 0 0 1 0 Updated Jan 8, 2025
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    waldronlab/MultiAssayExperiment’s past year of commit activity
    R 70 33 4 1 Updated Jan 7, 2025
  • subtypeHeterogeneity Public

    Tumor subclonality of expression-based cancer subtypes

    waldronlab/subtypeHeterogeneity’s past year of commit activity
    R 6 0 1 0 Updated Jan 7, 2025
  • curatedMetagenomicDataAnalyses Public

    Analyses in R and Python Using curatedMetagenomicData

    waldronlab/curatedMetagenomicDataAnalyses’s past year of commit activity
    Python 27 CC-BY-4.0 8 6 0 Updated Jan 6, 2025
  • RaggedExperiment_SoftNote Public Forked from vjcitn/raggedchk

    exploration of RaggedExperiment

    waldronlab/RaggedExperiment_SoftNote’s past year of commit activity
    R 0 CC0-1.0 1 0 0 Updated Jan 6, 2025
  • CNVWorkshop Public

    Workshop for CNV analysis with Bioconductor

    waldronlab/CNVWorkshop’s past year of commit activity
    R 17 2 1 0 Updated Jan 6, 2025
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