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Added CPUS_PER_TASK and a jupyterlab.sbatch #44

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Added CPUS_PER_TASK and a jupyterlab.sbatch #44

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223002a
Added CPUS_PER_TASK to setup.sh and start.sh
emarti Jun 2, 2023
fc8e799
Added jupyter lab sbatch
emarti Jun 2, 2023
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9 changes: 9 additions & 0 deletions sbatches/sherlock/jupyterlab.sbatch
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Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
#!/bin/bash

PORT=$1
NOTEBOOK_DIR=$2
cd $NOTEBOOK_DIR

module load python/3.6.1
module load nodejs/9.5.0
jupyter lab --no-browser --port=$PORT
4 changes: 3 additions & 1 deletion setup.sh
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Expand Up @@ -90,8 +90,10 @@ MEM=20G

TIME=8:00:00

CPUS_PER_TASK=1

for var in FORWARD_USERNAME PORT PARTITION RESOURCE MEM TIME CPUS_PER_TASK CONTAINERSHARE MACHINEPREFIX DOMAINNAME USE_LSOF ISOLATEDCOMPUTENODE CONNECTION_WAIT_SECONDS

for var in FORWARD_USERNAME PORT PARTITION RESOURCE MEM TIME CONTAINERSHARE MACHINEPREFIX DOMAINNAME USE_LSOF ISOLATEDCOMPUTENODE CONNECTION_WAIT_SECONDS
do
echo "$var="'"'"$(eval echo '$'"$var")"'"'
done >> params.sh
1 change: 1 addition & 0 deletions start.sh
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Expand Up @@ -58,6 +58,7 @@ command="sbatch
--error=$RESOURCE_HOME/forward-util/$SBATCH_NAME.err
--mem=$MEM
--time=$TIME
--cpus-per-task=$CPUS_PER_TASK
$RESOURCE_HOME/forward-util/$SBATCH_NAME $PORT \"${@:2}\""

echo ${command}
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