Add lofreq

[KaiWaldrant]

Description

Add lofreq biobase components:

• call
• indelqual

Issue ticket number

Checklist before requesting a review

• I have performed a self-review of my code

• Conforms to the Contributing guidelines

• Proposed changes are described in the CHANGELOG.md

• I have tested my code with viash ns test --parallel -q <name or namespace>

viash ns test --parallel -q lofreq
The working directory for the namespace tests is /tmp/viash_ns_test3438401139745231693
           namespace        functionality             platform            test_name exit_code duration               result
              lofreq     lofreq_indelqual               docker                start                                        
              lofreq          lofreq_call               docker                start                                        
              lofreq          lofreq_call               docker     build_executable         0        2              SUCCESS
              lofreq          lofreq_call               docker              test.sh         0        1              SUCCESS
              lofreq     lofreq_indelqual               docker     build_executable         0        2              SUCCESS
              lofreq     lofreq_indelqual               docker              test.sh         0        2              SUCCESS
Not all configs built and tested successfully
  6 configs were disabled
  4/4 configs built and tested successfully

• Check the correct box. Does this PR contain:
  • Breaking changes
  • New functionality
  • Major changes
  • Minor changes
  • Documentation
  • Bug fixes

[rcannood]

Thanks for your PR! See comments ☺️

[rcannood]

How big is this file? Do you think we could find a smaller one?

[KaiWaldrant]

about 50 MB :s

[KaiWaldrant]

21 is the smallest chromosome. Don't really think it is inside this scope but maybe we could subset the files in the future ?

[rcannood]

I'm not confortable yet adding a 50MB resource file to the repo 😅