update busco to point to busco_list_datasets component

viash-hub · Feb 6, 2024 · 1920c9a · 1920c9a
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commit 1920c9a
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diff --git a/src/busco/busco/config.vsh.yaml b/src/busco/busco/config.vsh.yaml
@@ -35,7 +35,7 @@ functionality:
           required: false
           description: |
             Specify a BUSCO lineage dataset that is most closely related to the assembly or gene set being assessed. 
-            The full list of available datasets can be viewed [here](https://busco-data.ezlab.org/v5/data/lineages/) or by running `busco --list-datasets` (which requires installing the tool).
+            The full list of available datasets can be viewed [here](https://busco-data.ezlab.org/v5/data/lineages/) or by running the busco/busco_list_datasets component.
             When unsure, the "--auto_lineage" flag can be set to automatically find the optimal lineage path.
             Requested datasets will automatically be downloaded if not already present in the download folder.
           example: stramenopiles_odb10

diff --git a/src/busco/busco_list_datasets/test.sh b/src/busco/busco_list_datasets/test.sh
@@ -11,3 +11,5 @@ echo ">> Checking output"
 
 echo ">> Checking if output is empty"
 [ ! -s "datasets.txt" ] && echo "datasets.txt is empty" && exit 1
+
+rm datasets.txt
Original file line number	Diff line number	Diff line change
Expand Up		@@ -11,3 +11,5 @@ echo ">> Checking output"

		echo ">> Checking if output is empty"
		[ ! -s "datasets.txt" ] && echo "datasets.txt is empty" && exit 1

		rm datasets.txt