This repository has been archived by the owner on Jan 24, 2024. It is now read-only.
chore: common .github files #361
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: continuous-integration | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| formatting: | |
| permissions: | |
| contents: read # for actions/checkout to fetch code | |
| pull-requests: write # for marocchino/sticky-pull-request-comment to create or update PR comment | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| java: ['16'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: ${{ matrix.java }} | |
| distribution: 'adopt' | |
| - name: Check formatting | |
| run: mvn com.coveo:fmt-maven-plugin:check -Dverbose=true | |
| - name: Comment PR | |
| if: github.event_name == 'pull_request' && failure() | |
| uses: marocchino/[email protected] | |
| with: | |
| message: 'Please format your code with `mvn com.coveo:fmt-maven-plugin:format`.' | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| testing: | |
| runs-on: ubuntu-latest | |
| needs: formatting | |
| strategy: | |
| matrix: | |
| java: ['8', '16'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Check out LFS objects | |
| run: git lfs fetch --all | |
| - name: Set up JDK | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: ${{ matrix.java }} | |
| distribution: 'adopt' | |
| - name: Build JAR with Maven without submitting coverage report | |
| run: > | |
| mvn | |
| --batch-mode | |
| --update-snapshots | |
| clean | |
| package | |
| - name: Run end-to-end tests | |
| run: | | |
| cd tests/hg19-chr22 | |
| bash run-tests.sh | |
| testing-coverage: | |
| runs-on: ubuntu-latest | |
| needs: formatting | |
| strategy: | |
| matrix: | |
| java: ['16'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Check out LFS objects | |
| run: git lfs fetch --all | |
| - name: Set up JDK | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: ${{ matrix.java }} | |
| distribution: 'adopt' | |
| - name: Run test with Maven and submit coverage report | |
| run: > | |
| mvn | |
| --define repoToken=${{ secrets.COVERALLS_REPO_TOKEN }} | |
| --batch-mode | |
| --update-snapshots | |
| clean | |
| test | |
| jacoco:report | |
| coveralls:report |