Updated trusted tools (2024-09-21)

bgruening.yaml.lock

@@ -147,6 +147,7 @@ tools:
   owner: bgruening
   revisions:
   - 1ce9b1d72ec3
+  - 1f0769f0b56b
   - 276f5d8712d5
   - 291923e6f276
   - 3e4f8642c77e
@@ -256,6 +257,7 @@ tools:
 - name: jbrowse2
   owner: fubar
   revisions:
+  - 2fff478aca4b
   - 4aec47f872b3
   - 56f9a6e0fe80
   - 878c27dfea9d

eirene.yaml.lock

@@ -9,12 +9,14 @@ tools:
   - 6ba3526237e0
   - 702a849c1e0e
   - b3413f335327
+  - b341cfd4baf8
   - e7305ba0dd38
   - ebca18e223bf
   tool_panel_section_label: Metabolomics
 - name: recetox_aplcms_recover_weaker_signals
   owner: recetox
   revisions:
+  - 24278c6b6d1c
   - 99d118321d5f
   - a9bb2ccc53de
   - c3d4b82c7e5d
@@ -28,6 +30,7 @@ tools:
   - 02c772a49998
   - 1574b8a29e6f
   - 474d2bcb22e4
+  - 51332c2520c7
   - 9064aecc78a7
   - bd1956f4c2aa
   - d69ec1171d71
@@ -37,6 +40,7 @@ tools:
   revisions:
   - 149b9cc7499b
   - 15aae2bfa67d
+  - 18ec7635bac6
   - 550667ce03f1
   - 60a09c4fa7a0
   - b9b19a74ac01
@@ -50,6 +54,7 @@ tools:
   - 8fb5e458831f
   - b5a1f35abd8a
   - d90187b0f247
+  - ea0758b41473
   - ffbabefbd2e2
   tool_panel_section_label: Metabolomics
 - name: recetox_aplcms_merge_known_table
@@ -59,12 +64,14 @@ tools:
   - 17a48d0a80f4
   - 396a3b1eafd0
   - 8ecb609cc265
+  - cf061712a184
   - dd7bbc2b99d1
   - fb95cb4a6b9b
   tool_panel_section_label: Metabolomics
 - name: recetox_aplcms_compute_template
   owner: recetox
   revisions:
+  - 134be5abb208
   - 481d769e2f7a
   - 4963811b6dec
   - 51e37adf988f
@@ -80,6 +87,7 @@ tools:
   - 2d13fcae8b84
   - 79ad928a0dae
   - 7b42ee54d757
+  - c53a97599181
   - d5c638b72ce4
   tool_panel_section_label: Metabolomics
 - name: rmassbank
@@ -496,51 +504,79 @@ tools:
   revisions:
   - 434fa3233e96
   - 7579b0cda787
+  - ccd9b0c1aee6
   tool_panel_section_label: Metabolomics
 - name: mfassignr_histnoise
   owner: recetox
   revisions:
   - 12b63108d645
   - 5d99cb9755da
+  - e93401e2ad89
   tool_panel_section_label: Metabolomics
 - name: mfassignr_kmdnoise
   owner: recetox
   revisions:
   - 39a642fc9638
   - 99d021734000
+  - a9fba8378048
   tool_panel_section_label: Metabolomics
 - name: mfassignr_isofiltr
   owner: recetox
   revisions:
   - e4ddc3bc7e15
   - e7ef7718505d
+  - ef0388b42f7a
   tool_panel_section_label: Metabolomics
 - name: mfassignr_mfassign
   owner: recetox
   revisions:
   - 9cbbfd54d7c4
+  - d2bad53dd220
   - d5745e78fcfe
   tool_panel_section_label: Metabolomics
 - name: mfassignr_mfassigncho
   owner: recetox
   revisions:
+  - b92c9388240a
   - b96a462d9c3f
   - db058392cb2e
   tool_panel_section_label: Metabolomics
 - name: mfassignr_recal
   owner: recetox
   revisions:
   - 13ef8b748af9
+  - 3ea8ed561c5a
   - a3113a7c1767
   tool_panel_section_label: Metabolomics
 - name: mfassignr_recallist
   owner: recetox
   revisions:
+  - 1104682fb7cc
   - 7e5ccc8b6f6e
   - ddb9d330ecc0
   tool_panel_section_label: Metabolomics
+- name: mfassignr_findrecalseries
+  owner: recetox
+  revisions:
+  - ad4176b336dc
+  tool_panel_section_label: Metabolomics
 - name: rcx_tk
   owner: recetox
   revisions:
   - 54401f9d1a30
   tool_panel_section_label: Metabolomics
+- name: ms2deepscore_config_generator
+  owner: recetox
+  revisions:
+  - 7e4ac334fc33
+  tool_panel_section_label: Metabolomics
+- name: ms2deepscore_similarity
+  owner: recetox
+  revisions:
+  - 58c95171a0d3
+  tool_panel_section_label: Metabolomics
+- name: ms2deepscore_training
+  owner: recetox
+  revisions:
+  - 0a0529822d91
+  tool_panel_section_label: Metabolomics

rnateam.yaml.lock

@@ -106,11 +106,26 @@ tools:
   revisions:
   - 0addbdbc1344
   tool_panel_section_label: RNA Analysis
+- name: mirdeep2
+  owner: rnateam
+  revisions:
+  - 6a17e1229b9f
+  tool_panel_section_label: RNA Analysis
+- name: mirdeep2_mapper
+  owner: rnateam
+  revisions:
+  - dbbe92348c7a
+  tool_panel_section_label: RNA Analysis
 - name: nastiseq
   owner: rnateam
   revisions:
   - 0a0bba8e1823
   tool_panel_section_label: RNA Analysis
+- name: rnacode
+  owner: rnateam
+  revisions:
+  - d49b9759e294
+  tool_panel_section_label: RNA Analysis
 - name: pipmir
   owner: rnateam
   revisions:

single-cell-ebi-gxa.yaml.lock

@@ -1159,6 +1159,7 @@ tools:
   - 68a2b5445558
   - 893ff9213a34
   - 93f61ea19336
+  - bd4b54b75888
   - f321c60167d4
   tool_panel_section_id: hca_sc_label_analysis_tools
 - name: garnett_check_markers

tools_iuc.yaml.lock

@@ -640,10 +640,18 @@ tools:
   revisions:
   - 57db282ca204
   - f8d72275878e
+- name: data_manager_humann2_database_downloader
+  owner: iuc
+  revisions:
+  - ff9cf22838d4
 - name: data_manager_ncbi_fcs_gx_database_downloader
   owner: iuc
   revisions:
   - 6be6e6198ac3
+- name: data_manager_picard_index_builder
+  owner: devteam
+  revisions:
+  - 7124d2c14e4b
 - name: optitype
   owner: iuc
   revisions:
@@ -836,6 +844,7 @@ tools:
   - 841084c5fc46
   - 8f1b150a2487
   - a929ce596a34
+  - d6d5ccc2c581
   - f4fb67b97a63
   - fa5259cc561b
   tool_panel_section_label: Assembly
@@ -1688,6 +1697,16 @@ tools:
   revisions:
   - a2f83a375bf2
   tool_panel_section_label: Convert Formats
+- name: ucsc_nettoaxt
+  owner: iuc
+  revisions:
+  - 55efc5c37c16
+  tool_panel_section_label: Convert Formats
+- name: ucsc_netfilter
+  owner: iuc
+  revisions:
+  - 128ec4c44111
+  tool_panel_section_label: Convert Formats
 - name: emboss_5
   owner: devteam
   revisions:
@@ -1923,6 +1942,11 @@ tools:
   - de6cebe3c043
   - fe74900d6dc7
   tool_panel_section_label: FASTA/FASTQ
+- name: fasta_clipping_histogram
+  owner: devteam
+  revisions:
+  - 8889eb864cef
+  tool_panel_section_label: FASTA/FASTQ
 - name: fasta_compute_length
   owner: devteam
   revisions:
@@ -2480,6 +2504,7 @@ tools:
 - name: bigwig_outlier_bed
   owner: iuc
   revisions:
+  - 00b3da7776a0
   - 61946b8bd43b
   - ebcd48f183b3
   tool_panel_section_label: Filter and Sort
@@ -4829,6 +4854,7 @@ tools:
   revisions:
   - 65d52c693b8e
   - a68b985913ab
+  - b907a3c0434f
   tool_panel_section_label: Metagenomic Analysis
 - name: humann
   owner: iuc
@@ -5393,6 +5419,7 @@ tools:
   - 2131d7dca455
   - 289b3807e80c
   - 6dee4abadccb
+  - 740fd2d16a28
   - a16313517e55
   - a92a632c4d9b
   - b6897977d13e
@@ -9704,6 +9731,11 @@ tools:
   - e1b3b37aa69f
   - ea5e944f447d
   tool_panel_section_label: Send Data
+- name: cosg
+  owner: iuc
+  revisions:
+  - cf880680fd0b
+  tool_panel_section_label: Single-cell
 - name: sceasy_convert
   owner: iuc
   revisions:
@@ -9907,6 +9939,7 @@ tools:
   - 178242b82297
   - 20cfb9f3dded
   - 35bc2eb568ed
+  - 38db3fef7aad
   - 3e4e1cf73d98
   - 4d8f983cd751
   - 64ff3ef24fae
@@ -9935,6 +9968,7 @@ tools:
   - 713a0c65b1fe
   - 72a6bebab2a5
   - 8b9610ab366a
+  - 8cb783c81905
   - a03ff8633507
   - a72e9faea895
   - a97abb8cd15b
@@ -9963,6 +9997,7 @@ tools:
   - c5d3684f7c4c
   - ca086f24422f
   - cc0deb593fc8
+  - d1cd8c147809
   - e4c99c83dfbf
   - f54f0f0598ad
   tool_panel_section_label: Single-cell
@@ -9973,6 +10008,7 @@ tools:
   - 51d945eab1e1
   - 5342ce58cd1e
   - 55f2212bb675
+  - 56c0d4acef02
   - 5dada6f76047
   - 7b9fafe32c86
   - 8e0f141c8c66
@@ -9991,6 +10027,7 @@ tools:
 - name: scanpy_plot
   owner: iuc
   revisions:
+  - 0185bd174ea0
   - 1072ce66b426
   - 2dfb2227a16c
   - 397d2c97af05
@@ -10022,6 +10059,7 @@ tools:
   - 80d4e2cac903
   - 94c8f42efc47
   - 9ca360dde8e3
+  - 9fb627495ec2
   - a39040ae0a38
   - a89ee42625ad
   - b70219da4a96
@@ -10093,6 +10131,16 @@ tools:
   revisions:
   - 29e6bfb2cf49
   tool_panel_section_label: Single-cell
+- name: spapros_selection
+  owner: iuc
+  revisions:
+  - c7527212b66b
+  tool_panel_section_label: Single-cell
+- name: spapros_evaluation
+  owner: iuc
+  revisions:
+  - 0c1b0a3b19df
+  tool_panel_section_label: Single-cell
 - name: episcanpy_build_matrix
   owner: iuc
   revisions:
@@ -10197,6 +10245,7 @@ tools:
   revisions:
   - 8192b416f945
   - c0b01c55a0e0
+  - f8ee933de3ca
   tool_panel_section_label: Statistics
 - name: correlation
   owner: devteam