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New and updated tools 2024-08-01 #313

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51 changes: 51 additions & 0 deletions _posts/2024-08-01-tool-updates.md
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---
site: freiburg
title: 'Galaxy Australia tool updates 2024-08-01'
tags: [tools]
supporters:
- galaxyaustralia
- melbinfo
- qcif
---


<style>
table {
width: 100%;
margin: 10px 20px;
}
table th {
display: none;
}
td {
padding: 3px 5px;
}
tr td:nth-child(1) {
vertical-align: top;
width: 25%;
}
</style>

### Tools installed

| Section | Tool |
|---------|-----|
| **ChemicalToolBox** | biopdb_align_and_rmsd [6352d6dd74e2](https://toolshed.g2.bx.psu.edu/view/chemteam/biopdb_align_and_rmsd/6352d6dd74e2) |
| **Convert Formats** | agat [abba05ead5d7](https://toolshed.g2.bx.psu.edu/view/bgruening/agat/abba05ead5d7) |
| **Expression Tools** | map_param_value [5ac8a4bf7a8d](https://toolshed.g2.bx.psu.edu/view/iuc/map_param_value/5ac8a4bf7a8d) |
| **Metagenomic Analysis** | lotus2 [eb7baf1f72ca](https://toolshed.g2.bx.psu.edu/view/earlhaminst/lotus2/eb7baf1f72ca)<br/>humann_rna_dna_norm [dcc4123cd3e1](https://toolshed.g2.bx.psu.edu/view/iuc/humann_rna_dna_norm/dcc4123cd3e1) |
| **SAM/BAM** | bamtools_split_mapped [fa7b5520ae53](https://toolshed.g2.bx.psu.edu/view/iuc/bamtools_split_mapped/fa7b5520ae53)<br/>samtools_ampliconclip [6a8febad1f6c](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_ampliconclip/6a8febad1f6c)<br/>samtools_coverage [c4ff13d2aab3](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_coverage/c4ff13d2aab3)<br/>samtools_fixmate [e5ece8fa99de](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_fixmate/e5ece8fa99de)<br/>samtools_markdup [a389f74c3630](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_markdup/a389f74c3630) |
| **Single-cell** | scater_normalize [946179ef029c](https://toolshed.g2.bx.psu.edu/view/iuc/scater_normalize/946179ef029c)<br/>10x_bamtofastq [f71fd828c126](https://toolshed.g2.bx.psu.edu/view/bgruening/10x_bamtofastq/f71fd828c126)<br/>alevin [04b494623f8e](https://toolshed.g2.bx.psu.edu/view/bgruening/alevin/04b494623f8e), [c9944a2600f1](https://toolshed.g2.bx.psu.edu/view/bgruening/alevin/c9944a2600f1)<br/>baredsc_1d [02b1fe7aed76](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/02b1fe7aed76), [0e70b2dfe4be](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/0e70b2dfe4be), [4fff5a293013](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/4fff5a293013), [769d815e4b0d](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/769d815e4b0d)<br/>baredsc_2d [344c2af50552](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/344c2af50552), [a90f8efe08b4](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/a90f8efe08b4), [aa4a6f0916b4](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/aa4a6f0916b4), [c29e7bb492bf](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/c29e7bb492bf)<br/>baredsc_combine_1d [050cf43887d3](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/050cf43887d3), [5b7c81b35b89](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/5b7c81b35b89), [b13d3e4c48e1](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/b13d3e4c48e1), [c32347702e12](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/c32347702e12)<br/>baredsc_combine_2d [02fc39c8610d](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/02fc39c8610d), [1d77986f9ddc](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/1d77986f9ddc), [239193b96d72](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/239193b96d72), [ae969fdb8442](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/ae969fdb8442)<br/>cell_intensity_processing [5d541df02496](https://toolshed.g2.bx.psu.edu/view/goeckslab/cell_intensity_processing/5d541df02496)<br/>cite_seq_count [3df3d1b51110](https://toolshed.g2.bx.psu.edu/view/iuc/cite_seq_count/3df3d1b51110)<br/>episcanpy_build_matrix [31a21ba2c5ea](https://toolshed.g2.bx.psu.edu/view/iuc/episcanpy_build_matrix/31a21ba2c5ea)<br/>episcanpy_cluster_embed [f4713992f23a](https://toolshed.g2.bx.psu.edu/view/iuc/episcanpy_cluster_embed/f4713992f23a)<br/>episcanpy_preprocess [29f5f25b9935](https://toolshed.g2.bx.psu.edu/view/iuc/episcanpy_preprocess/29f5f25b9935)<br/>gsc_scran_normalize [6864acb21714](https://toolshed.g2.bx.psu.edu/view/artbio/gsc_scran_normalize/6864acb21714)<br/>hicexplorer_chicaggregatestatistic [01c37e54e86e](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicaggregatestatistic/01c37e54e86e), [fb7068d30ec9](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicaggregatestatistic/fb7068d30ec9)<br/>hicexplorer_chicdifferentialtest [9d42a6133690](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicdifferentialtest/9d42a6133690), [57aeaf6b237d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicdifferentialtest/57aeaf6b237d)<br/>hicexplorer_chicexportdata [23b8d6b8960c](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicexportdata/23b8d6b8960c), [163fd744e235](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicexportdata/163fd744e235)<br/>hicexplorer_chicplotviewpoint [013e53ccc7ac](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicplotviewpoint/013e53ccc7ac), [f47ac4a0b337](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicplotviewpoint/f47ac4a0b337)<br/>hicexplorer_chicqualitycontrol [b892fa1fcaec](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicqualitycontrol/b892fa1fcaec), [a63e9713c39d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicqualitycontrol/a63e9713c39d)<br/>hicexplorer_chicsignificantinteractions [640e0e45518a](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicsignificantinteractions/640e0e45518a), [45a386d18509](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicsignificantinteractions/45a386d18509)<br/>hicexplorer_chicviewpointbackgroundmodel [9d02f1819e81](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicviewpointbackgroundmodel/9d02f1819e81), [f963c251ac77](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicviewpointbackgroundmodel/f963c251ac77)<br/>hicexplorer_chicviewpoint [f881c94fb3b3](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicviewpoint/f881c94fb3b3), [40fee49bc6c3](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicviewpoint/40fee49bc6c3)<br/>hicexplorer_hicadjustmatrix [2dccb6bb0add](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicadjustmatrix/2dccb6bb0add), [e06265d204f6](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicadjustmatrix/e06265d204f6)<br/>hicexplorer_hicaggregatecontacts [f0216498a666](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicaggregatecontacts/f0216498a666), [b05f662f9f35](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicaggregatecontacts/b05f662f9f35)<br/>hicexplorer_hicaverageregions [c72fa6cb8817](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicaverageregions/c72fa6cb8817), [8a11d70b6cd8](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicaverageregions/8a11d70b6cd8)<br/>hicexplorer_hiccomparematrices [3ee5332bf57c](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccomparematrices/3ee5332bf57c), [e03780179ee5](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccomparematrices/e03780179ee5)<br/>hicexplorer_hiccompartmentspolarization [3a6a5381db36](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccompartmentspolarization/3a6a5381db36), [4401ed529d2c](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccompartmentspolarization/4401ed529d2c)<br/>hicexplorer_hicconvertformat [c0737631eea1](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicconvertformat/c0737631eea1), [2ba6cee8e4db](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicconvertformat/2ba6cee8e4db)<br/>hicexplorer_hiccorrectmatrix [ea19190ce5e0](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccorrectmatrix/ea19190ce5e0), [62b720dceb56](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccorrectmatrix/62b720dceb56)<br/>hicexplorer_hiccorrelate [2b4d6a8dab36](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccorrelate/2b4d6a8dab36), [2786a931cad2](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccorrelate/2786a931cad2)<br/>hicexplorer_hicdetectloops [0410b6aada45](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdetectloops/0410b6aada45), [ffc33339cd3e](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdetectloops/ffc33339cd3e)<br/>hicexplorer_hicdifferentialtad [77d8e0fd162a](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdifferentialtad/77d8e0fd162a), [5dfba24d7bdd](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdifferentialtad/5dfba24d7bdd)<br/>hicexplorer_hicfindrestrictionsites [6c5097f6d41e](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicfindrestrictionsites/6c5097f6d41e), [972dcccb5bbc](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicfindrestrictionsites/972dcccb5bbc)<br/>hicexplorer_hichyperoptdetectloops [7f7c6ead2d0d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hichyperoptdetectloops/7f7c6ead2d0d), [409396ea5cf0](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hichyperoptdetectloops/409396ea5cf0)<br/>hicexplorer_hicinfo [e4f8fceab96a](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicinfo/e4f8fceab96a), [51e40e9b6c3c](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicinfo/51e40e9b6c3c)<br/>hicexplorer_hicinterintratad [55b013e59018](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicinterintratad/55b013e59018), [c261b6b05ee3](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicinterintratad/c261b6b05ee3)<br/>hicexplorer_hicmergedomains [b376ef118807](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergedomains/b376ef118807), [b6b8c8672756](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergedomains/b6b8c8672756)<br/>hicexplorer_hicmergeloops [1511a8ebe906](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergeloops/1511a8ebe906), [ed900cd4a0a9](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergeloops/ed900cd4a0a9)<br/>hicexplorer_hicnormalize [6d042c96aceb](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicnormalize/6d042c96aceb), [f34ab9882252](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicnormalize/f34ab9882252)<br/>hicexplorer_hicplotaverageregions [ea5d67ec94ab](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotaverageregions/ea5d67ec94ab), [dd9988943f53](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotaverageregions/dd9988943f53)<br/>hicexplorer_hicplotdistvscounts [6326cd29c1c3](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotdistvscounts/6326cd29c1c3), [11f39d7f6c64](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotdistvscounts/11f39d7f6c64)<br/>hicexplorer_hicplotsvl [b4e780e93c91](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotsvl/b4e780e93c91), [337705015ee8](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotsvl/337705015ee8)<br/>hicexplorer_hicplotviewpoint [58de3c7c8e89](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotviewpoint/58de3c7c8e89), [8d203e74869b](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotviewpoint/8d203e74869b)<br/>hicexplorer_hicquickqc [21d859ad4502](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicquickqc/21d859ad4502), [ea8fb5e899e8](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicquickqc/ea8fb5e899e8)<br/>hicexplorer_hicsummatrices [36dfa2825a59](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicsummatrices/36dfa2825a59), [1d6af10874d5](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicsummatrices/1d6af10874d5)<br/>hicexplorer_hictadclassifier [887d203233e5](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hictadclassifier/887d203233e5)<br/>hicexplorer_hictraintadclassifier [1ff19476c5a5](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hictraintadclassifier/1ff19476c5a5)<br/>hicexplorer_hictransform [f36828ebdc54](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hictransform/f36828ebdc54), [27fe5cd1729c](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hictransform/27fe5cd1729c)<br/>hicexplorer_hicvalidatelocations [1d201e8378b3](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicvalidatelocations/1d201e8378b3), [11a3385e03b5](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicvalidatelocations/11a3385e03b5)<br/>modify_loom [4b0adaa31c95](https://toolshed.g2.bx.psu.edu/view/iuc/modify_loom/4b0adaa31c95), [e98619de2776](https://toolshed.g2.bx.psu.edu/view/iuc/modify_loom/e98619de2776)<br/>quantification [3a916c4e9f5f](https://toolshed.g2.bx.psu.edu/view/perssond/quantification/3a916c4e9f5f)<br/>s3segmenter [96d0d969ebc9](https://toolshed.g2.bx.psu.edu/view/perssond/s3segmenter/96d0d969ebc9)<br/>sceasy_convert [f62bc418173f](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/sceasy_convert/f62bc418173f)<br/>schicexplorer_schicadjustmatrix [2e773e00ceb0](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicadjustmatrix/2e773e00ceb0)<br/>schicexplorer_schiccluster [baa3ae7ac42c](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schiccluster/baa3ae7ac42c)<br/>schicexplorer_schicclustercompartments [54b6cef88a7f](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicclustercompartments/54b6cef88a7f)<br/>schicexplorer_schicclusterminhash [3048283ee054](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicclusterminhash/3048283ee054)<br/>schicexplorer_schicclustersvl [e6ec3914a076](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicclustersvl/e6ec3914a076)<br/>schicexplorer_schicconsensusmatrices [33b1c99cc709](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicconsensusmatrices/33b1c99cc709)<br/>schicexplorer_schiccorrectmatrices [295558e266d0](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schiccorrectmatrices/295558e266d0)<br/>schicexplorer_schiccreatebulkmatrix [acb3ed49109e](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schiccreatebulkmatrix/acb3ed49109e)<br/>schicexplorer_schicdemultiplex [f224fc9af1d3](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicdemultiplex/f224fc9af1d3)<br/>schicexplorer_schicinfo [41b415c410e3](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicinfo/41b415c410e3)<br/>schicexplorer_schicmergematrixbins [47ef02546fe9](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicmergematrixbins/47ef02546fe9)<br/>schicexplorer_schicmergetoscool [70a13d0a950f](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicmergetoscool/70a13d0a950f)<br/>schicexplorer_schicnormalize [66e96c3d3c5d](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicnormalize/66e96c3d3c5d)<br/>schicexplorer_schicplotclusterprofiles [65f2f5d29947](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicplotclusterprofiles/65f2f5d29947)<br/>schicexplorer_schicplotconsensusmatrices [95b1216e1e70](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicplotconsensusmatrices/95b1216e1e70)<br/>schicexplorer_schicqualitycontrol [4a841ab67e3b](https://toolshed.g2.bx.psu.edu/view/iuc/schicexplorer_schicqualitycontrol/4a841ab67e3b)<br/>sinto_barcode [d1b34ac42b8f](https://toolshed.g2.bx.psu.edu/view/iuc/sinto_barcode/d1b34ac42b8f)<br/>sinto_fragments [29e6bfb2cf49](https://toolshed.g2.bx.psu.edu/view/iuc/sinto_fragments/29e6bfb2cf49)<br/>slice_image [a72590196440](https://toolshed.g2.bx.psu.edu/view/imgteam/slice_image/a72590196440)<br/>snapatac2_clustering [8f8bef61fd0b](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_clustering/8f8bef61fd0b), [afb90d3485df](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_clustering/afb90d3485df)<br/>snapatac2_peaks_and_motif [588c811fdd48](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_peaks_and_motif/588c811fdd48), [88192fe25375](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_peaks_and_motif/88192fe25375)<br/>snapatac2_plotting [fecf9664c885](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_plotting/fecf9664c885), [370d45e0d1a8](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_plotting/370d45e0d1a8)<br/>snapatac2_preprocessing [cec3e76eaf05](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_preprocessing/cec3e76eaf05), [fef8f61cb34c](https://toolshed.g2.bx.psu.edu/view/iuc/snapatac2_preprocessing/fef8f61cb34c)<br/>squidpy [d30ef0613122](https://toolshed.g2.bx.psu.edu/view/goeckslab/squidpy/d30ef0613122)<br/>velocyto_cli [883c33ef3372](https://toolshed.g2.bx.psu.edu/view/iuc/velocyto_cli/883c33ef3372), [90e95e9ee190](https://toolshed.g2.bx.psu.edu/view/iuc/velocyto_cli/90e95e9ee190)<br/>vitessce_spatial [7cc457aa78b1](https://toolshed.g2.bx.psu.edu/view/goeckslab/vitessce_spatial/7cc457aa78b1) |

### Tools updated

| Section | Tool |
|---------|-----|
| **Assembly** | blobtoolkit [8c2167481e72](https://toolshed.g2.bx.psu.edu/view/bgruening/blobtoolkit/8c2167481e72)<br/>unicycler [e022dff952df](https://toolshed.g2.bx.psu.edu/view/iuc/unicycler/e022dff952df) |
| **Imaging** | 2d_auto_threshold [699a5e9146b3](https://toolshed.g2.bx.psu.edu/view/imgteam/2d_auto_threshold/699a5e9146b3)<br/>2d_filter_segmentation_by_features [9d47aabda459](https://toolshed.g2.bx.psu.edu/view/imgteam/2d_filter_segmentation_by_features/9d47aabda459)<br/>2d_histogram_equalization [b1c2c210813c](https://toolshed.g2.bx.psu.edu/view/imgteam/2d_histogram_equalization/b1c2c210813c)<br/>2d_simple_filter [d51310ab328a](https://toolshed.g2.bx.psu.edu/view/imgteam/2d_simple_filter/d51310ab328a)<br/>bfconvert [fcadded98e61](https://toolshed.g2.bx.psu.edu/view/imgteam/bfconvert/fcadded98e61) |
| **Metagenomic Analysis** | merge_metaphlan_tables [05ad7d35ce92](https://toolshed.g2.bx.psu.edu/view/iuc/merge_metaphlan_tables/05ad7d35ce92) |
| **Nanopore** | dorado_pod5_convert [28928576e1ea](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/dorado_pod5_convert/28928576e1ea)<br/>dorado [fc5b6491cf78](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/dorado/fc5b6491cf78) |
| **Proteomic AI** | alphafold2 [6ab1a261520a](https://toolshed.g2.bx.psu.edu/view/galaxy-australia/alphafold2/6ab1a261520a) |
| **Proteomics** | cardinal_quality_report [d426a9107a6c](https://toolshed.g2.bx.psu.edu/view/galaxyp/cardinal_quality_report/d426a9107a6c)<br/>cardinal_segmentations [91f0f5922011](https://toolshed.g2.bx.psu.edu/view/galaxyp/cardinal_segmentations/91f0f5922011)<br/>cardinal_spectra_plots [ba92b59cd529](https://toolshed.g2.bx.psu.edu/view/galaxyp/cardinal_spectra_plots/ba92b59cd529) |
| **RNA-seq** | qualimap_counts [72927fc9e9ed](https://toolshed.g2.bx.psu.edu/view/iuc/qualimap_counts/72927fc9e9ed) |
| **Single-cell** | anndata_export [c0b037b12765](https://toolshed.g2.bx.psu.edu/view/iuc/anndata_export/c0b037b12765), [c5ac926c838f](https://toolshed.g2.bx.psu.edu/view/iuc/anndata_export/c5ac926c838f)<br/>scanpy_inspect [6c145a6868cc](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_inspect/6c145a6868cc)<br/>scanpy_normalize [c9cb76cf8d6c](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_normalize/c9cb76cf8d6c)<br/>scanpy_plot [7647e5cd1b8b](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/7647e5cd1b8b), [95777145cb92](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/95777145cb92)<br/>music_construct_eset [2cfd0db49bbc](https://toolshed.g2.bx.psu.edu/view/bgruening/music_construct_eset/2cfd0db49bbc)<br/>raceid_clustering [7e014059a88d](https://toolshed.g2.bx.psu.edu/view/iuc/raceid_clustering/7e014059a88d)<br/>raceid_filtnormconf [7608d5faee41](https://toolshed.g2.bx.psu.edu/view/iuc/raceid_filtnormconf/7608d5faee41)<br/>raceid_inspectclusters [37a47c4fd84d](https://toolshed.g2.bx.psu.edu/view/iuc/raceid_inspectclusters/37a47c4fd84d)<br/>raceid_inspecttrajectory [69018f285aa3](https://toolshed.g2.bx.psu.edu/view/iuc/raceid_inspecttrajectory/69018f285aa3)<br/>raceid_trajectory [44b935f2271b](https://toolshed.g2.bx.psu.edu/view/iuc/raceid_trajectory/44b935f2271b)<br/>scanpy_filter [d636ce5cde16](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/d636ce5cde16) |