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[WIP] fgenesh toolbox filter #2010

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[WIP] fgenesh toolbox filter #2010

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41 changes: 13 additions & 28 deletions templates/galaxy/toolbox/filters/ga_filters.py.j2
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Original file line number Diff line number Diff line change
Expand Up @@ -6,34 +6,6 @@ test_tools = [
'id': 'maxquant_test',
'role': 'maxquant_test',
},
{
'id': 'fgenesh',
'role': 'Fgenesh',
},
{
'id': 'fgenesh_annotate',
'role': 'Fgenesh',
},
{
'id': 'fgenesh_get_mrnas_gc',
'role': 'Fgenesh',
},
{
'id': 'fgenesh_merge',
'role': 'Fgenesh',
},
{
'id': 'fgenesh_split',
'role': 'Fgenesh',
},
{
'id': 'fgenesh_to_genbank',
'role': 'Fgenesh',
},
{
'id': 'fgenesh_get_proteins',
'role': 'Fgenesh',
},
{
'id': 'cellranger',
'role': 'cellranger',
Expand All @@ -56,6 +28,19 @@ def hide_test_tools(context, tool):
return user is not None and user.email in test_tool_users
return True

def hide_fgenesh(context, tool):
"""
make fgenesh* visible to members of Fgenesh group
"""
if tool.id.startswith('fgenesh'):
user = context.trans.user
return user is not None and (
user.email in test_tool_users or 'Fgenesh' in [
r.name for r in user.all_roles() if not r.deleted
]
)
return True

def restrict_alphafold(context, tool):
"""
Only let GA team, alphafold beta users and UoM vet school alphafold users see alphafold
Expand Down