CI #101
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| #push: | |
| # paths-ignore: | |
| # - 'docs/**' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| conda: | |
| name: conda | |
| runs-on: ${{matrix.os}}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| #- {os: macos, version: 1.12.0, channel: conda-forge, rust: stable} | |
| #- {os: windows, version: 1.12.0, channel: conda-forge, rust: stable} | |
| - {os: ubuntu, version: 1.12.0, channel: conda-forge, rust: stable, python-version: 3.9} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: actions-rs/toolchain@v1 | |
| with: {toolchain: '${{matrix.rust}}', profile: minimal, override: true} | |
| - uses: "actions/checkout@v2" | |
| - name: "Install miniconda" | |
| run: | | |
| if [[ ! -z $INSTALL_MINICONDA ]]; then source .github/workflows/install_miniconda.sh; fi | |
| - name: Install conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: "${{ matrix.python-version }}" | |
| channels: "conda-forge,anaconda" | |
| activate-environment: testenv | |
| - name: Install mamba | |
| run: | | |
| # hdf5 version 1.14 not currently supported yet so we restrict hdf5 to 1.13 at most | |
| echo "hdf5<=1.13" > $CONDA_PREFIX/conda-meta/pinned | |
| conda install -y -c ${{matrix.channel}} mamba | |
| - name: Install HDF5 (${{matrix.version}}${{matrix.mpi && '-' || ''}}${{matrix.mpi}}) | |
| run: | | |
| [ "${{matrix.mpi}}" != "" ] && MPICC_PKG=${{matrix.mpi}}-mpicc | |
| mamba install -y -c ${{matrix.channel}} 'hdf5=${{matrix.version}}=*${{matrix.mpi}}*' $MPICC_PKG | |
| - name: Build Rust version | |
| run: | | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| export PYO3_PYTHON=python3 | |
| [ "${{runner.os}}" != "Windows" ] && export RUSTFLAGS="-C link-args=-Wl,-rpath,$CONDA_PREFIX/lib" | |
| cargo check | |
| - name: "Install dependencies" | |
| run: | | |
| pwd | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| export PYO3_PYTHON=python3 | |
| which python | |
| python -VV | |
| python -m site | |
| python -m pip install --upgrade pip setuptools | |
| [ "${{runner.os}}" != "Windows" ] && export RUSTFLAGS="-C link-args=-Wl,-rpath,$CONDA_PREFIX/lib" | |
| mamba install --file requirements_test.txt | |
| - name: Install up4 on python | |
| run: | | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| export PYO3_PYTHON=python3 | |
| python3 -m pip install . | |
| python3 -c "import up4" | |
| python3 -c "import upppp_rust; print(upppp_rust.__file__)" | |
| - name: Run tests | |
| run: | | |
| export LD_LIBRARY_PATH="$CONDA_PREFIX/lib" | |
| python3 -c "import up4; print(up4.__file__)" | |
| python3 -m pytest tests/test_all.py | |
| - name: Setup Sphinx | |
| run: | | |
| mamba install -y -c ${{matrix.channel}} --file docs/requirements.txt | |
| - name: Generate Rust docs | |
| run: | | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| cargo doc --no-deps --target-dir docs/source/_static/ | |
| - name: Build HTML | |
| run: | | |
| pwd | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| export PYO3_PYTHON=python3 | |
| export LD_LIBRARY_PATH="$CONDA_PREFIX/lib" | |
| cd docs | |
| python3 -c "import up4; print(up4.__file__)" | |
| make html | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: html-doc | |
| path: docs/build/html | |
| - name: Deploy to GitHub Pages | |
| uses: JamesIves/[email protected] | |
| with: | |
| branch: gh-pages | |
| folder: docs/build/html | |