Unique Peptide Finder

This script queries the Unipept API and reports all tryptic peptides that are unique to a specific taxon.

Requirements

• Python3 needs to be installed locally
• tdqm module (do pip3 install tdqm if this is not yet installed)

Usage

Note: Make sure that you're running these commands from the root of this repository's folder.

python3 unique_peptides_taxon.py <NCBI_ID>

Example

> python3 unique_peptides_taxon.py 83333
AAGLATGNVSTAELQDATPAALEAHVTSR
LTTLSHTSEGHR
VANLEAQLAEAQTR
TVLTWTVLP
LIIFFIGTVFVLAALIPMQQVGVEK
IYDYIDIIIEDYENTK
GDFMNIFKPISYIASLAPR
VTNIWHGR
...