Remove automatic change from I to L

unipept · Jun 13, 2023 · baf8ae9 · baf8ae9
1 parent 72e9984
commit baf8ae9
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Showing 2 changed files with 3 additions and 14 deletions.
diff --git a/src/logic/communication/peptide/Pept2DataCommunicator.ts b/src/logic/communication/peptide/Pept2DataCommunicator.ts
@@ -54,7 +54,7 @@ export default class Pept2DataCommunicator {
                 try {
                     const response = await NetworkUtils.postJson(this.apiBaseUrl + "/mpa/pept2data", requestData);
 
-                    for(const peptide of response.peptides) {
+                    for (const peptide of response.peptides) {
                         result.set(peptide.sequence, PeptideData.createFromPeptideDataResponse(peptide));
                     }
 
@@ -72,7 +72,7 @@ export default class Pept2DataCommunicator {
 
         try {
             // Perform the actual requests in parallel. (await cannot be removed!!)
-            await parallelLimit(requests, this.parallelRequests);  
+            await parallelLimit(requests, this.parallelRequests);
 
             const trustProcessor = new PeptideTrustProcessor();
             const trust = trustProcessor.getPeptideTrust(countTable, result);

diff --git a/src/logic/processing/peptide/PeptideCountTableProcessor.workerSource.ts b/src/logic/processing/peptide/PeptideCountTableProcessor.workerSource.ts
@@ -45,8 +45,7 @@ import Peptide from "../../../logic/ontology/peptide/Peptide";
 
 function filter(peptides: Peptide[], enableMissingCleavageHandling: boolean, equateIl: boolean): Peptide[] {
     let out = cleavePeptides(peptides, enableMissingCleavageHandling);
-    out = filterShortPeptides(out);
-    return equateIL(out, equateIl);
+    return filterShortPeptides(out);
 }
 
 /**
@@ -68,13 +67,3 @@ function cleavePeptides(peptides: Peptide[], advancedMissedCleavageHandling: boo
 function filterShortPeptides(peptides: Peptide[]): Peptide[] {
     return peptides.filter(p => p.length >= 5);
 }
-
-/**
- * Replaces every I with an L if equateIL is set to true.
- */
-function equateIL(peptides: Peptide[], equateIL: boolean): Peptide[] {
-    if (equateIL) {
-        return peptides.map(p => p.replace(/I/g, "L"));
-    }
-    return peptides;
-}