Merge pull request #44 from unipept/feature/clustering-options

Add configuration options for clustering, reordering and metric
unipept · Mar 9, 2021 · fe3ff51 · fe3ff51
2 parents 078ecef + 6eb47b4
commit fe3ff51
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Showing 36 changed files with 5,934 additions and 3,792 deletions.
diff --git a/dist/cluster/Cluster.d.ts b/dist/cluster/Cluster.d.ts
diff --git a/dist/cluster/ClusterElement.d.ts b/dist/cluster/ClusterElement.d.ts
diff --git a/dist/cluster/Clusterer.d.ts b/dist/cluster/Clusterer.d.ts
diff --git a/dist/cluster/TreeNode.d.ts b/dist/cluster/TreeNode.d.ts
diff --git a/dist/cluster/UPGMAClusterer.d.ts b/dist/cluster/UPGMAClusterer.d.ts
diff --git a/dist/color/ColorPalettes.d.ts b/dist/color/ColorPalettes.d.ts
diff --git a/dist/index.d.ts b/dist/index.d.ts
@@ -1,5 +1,6 @@
 import DataNode from "./DataNode";
-export { DataNode };
+import { DataNodeLike } from "./DataNode";
+export { DataNode, DataNodeLike };
 export * from "./visualizations";
 export * from "./transition";
 export * from "./color";

diff --git a/dist/metric/EuclidianDistanceMetric.d.ts b/dist/metric/EuclidianDistanceMetric.d.ts
diff --git a/dist/metric/Metric.d.ts b/dist/metric/Metric.d.ts
diff --git a/dist/reorder/MoloReorderer.d.ts b/dist/reorder/MoloReorderer.d.ts
diff --git a/dist/reorder/Reorderer.d.ts b/dist/reorder/Reorderer.d.ts
diff --git a/dist/unipept-visualizations.js b/dist/unipept-visualizations.js
diff --git a/dist/visualizations/heatmap/HeatmapSettings.d.ts b/dist/visualizations/heatmap/HeatmapSettings.d.ts
@@ -1,6 +1,8 @@
-import Settings from "./../../settings";
+import Settings from "./../../Settings";
 import HeatmapFeature from "./HeatmapFeature";
 import HeatmapValue from "./HeatmapValue";
+import Clusterer from "./cluster/Clusterer";
+import Reorderer from "./reorder/Reorderer";
 export default class HeatmapSettings extends Settings {
     /**
      * The amount of pixels that can maximally be used for row labels when initially rendering the heatmap.
@@ -92,6 +94,8 @@ export default class HeatmapSettings extends Settings {
      * Color of the lines used to construct a dendrogram (must be a valid HTML color string).
      */
     dendrogramColor: string;
+    clusteringAlgorithm: Clusterer;
+    reorderer: Reorderer;
     /**
      * Returns the html to use as tooltip for a cell. Is called with a HeatmapValue that represents the current cell and
      * the row and column objects associated with the highlighted cell as parameters. The result of getTooltipTitle is

diff --git a/dist/visualizations/heatmap/cluster/index.d.ts b/dist/visualizations/heatmap/cluster/index.d.ts
@@ -0,0 +1,4 @@
+import Clusterer from "./Clusterer";
+import UPGMAClusterer from "./UPGMAClusterer";
+import TreeNode from "./TreeNode";
+export { Clusterer, UPGMAClusterer, TreeNode };
diff --git a/dist/visualizations/heatmap/index.d.ts b/dist/visualizations/heatmap/index.d.ts
@@ -3,3 +3,6 @@ import HeatmapValue from "./HeatmapValue";
 import HeatmapSettings from "./HeatmapSettings";
 import HeatmapFeature from "./HeatmapFeature";
 export { Heatmap, HeatmapValue, HeatmapFeature, HeatmapSettings };
+export * from "./cluster/index";
+export * from "./metric/index";
+export * from "./reorder/index";
diff --git a/dist/visualizations/heatmap/reorder/index.d.ts b/dist/visualizations/heatmap/reorder/index.d.ts
@@ -0,0 +1,3 @@
+import Reorderer from "./Reorderer";
+import MoloReorderer from "./MoloReorderer";
+export { Reorderer, MoloReorderer };
diff --git a/dist/visualizations/treeview/HierarchyPointTreeviewNode.d.ts b/dist/visualizations/treeview/HierarchyPointTreeviewNode.d.ts