Code

SA construction#29

Code

Draft

SimonVandeVyver wants to merge 26 commits intodevelopunipept/unipept-index:developfrom building-sa-optunipept/unipept-index:building-sa-optCopy head branch name to clipboard

+223-47

Commits

Commits on Oct 14, 2024

• SA construction with bitpacking

  SimonVandeVyver

  committed
  c94df8d

• use global variable for bits_per_char

  SimonVandeVyver

  committed
  850b2ee

• fixed tests for libsais with bitpacking

  SimonVandeVyver

  committed
  c09b61a

• remove debug code

  SimonVandeVyver

  committed
  8d72316

• remove unused import

  SimonVandeVyver

  committed
  1b15fad

• bugfix shift overflow

  SimonVandeVyver

  committed
  9053d25

Commits on Oct 18, 2024

• use adapted libsais library

  SimonVandeVyver

  committed
  0424cd3

Commits on Oct 22, 2024

• support for sparseness factor up to 6

  SimonVandeVyver

  committed
  0ecb79e

• set max alfabet size to 2^28

  SimonVandeVyver

  committed
  bba56bb

• bugfix: check if libsais_sparseness big enough

  SimonVandeVyver

  committed
  ae2e5fa

• allow all sparseness factors

  SimonVandeVyver

  committed
  f1dc185

Commits on Oct 23, 2024

• minor changes

  SimonVandeVyver

  committed
  13a6d69

• add support for 8-bit libsais text

  SimonVandeVyver

  committed
  64e5589

Commits on Oct 24, 2024

• add comments + do not bitpack text sparseness is 1

  SimonVandeVyver

  committed
  aa6ef9f

• add comments

  SimonVandeVyver

  committed
  b9064e6

• add comment

  SimonVandeVyver

  committed
  944adc2

• run clippy

  SimonVandeVyver

  committed
  6dccb19

• cargo fmt

  SimonVandeVyver

  committed
  d2feb52

Commits on Oct 25, 2024

• allow sparseness 6 for libsais

  SimonVandeVyver

  committed
  b91a759

• keep bitpacked text owned before use

  SimonVandeVyver

  committed
  d436dfd

• set max sparseness to 5

  SimonVandeVyver

  committed
  4fd936f

• take ownership of text when bitpacking, don't keep both texts in memory

  SimonVandeVyver

  committed
  0fc7431

• adapt tests to pass text not as reference

  SimonVandeVyver

  committed
  bfd9069

Commits on Oct 28, 2024

• cargo fmt

  SimonVandeVyver

  committed
  1ff2e0f

• cargo clippy

  SimonVandeVyver

  committed
  0879f4e

• change link to unipept-libsais to https

  SimonVandeVyver

  authored
  1cd0465