update requirements pbs

unipept · Jun 24, 2024 · f83b202 · f83b202
1 parent db46a31
commit f83b202
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/sa-builder/build-compressed.pbs b/sa-builder/build-compressed.pbs
@@ -6,18 +6,18 @@
 ### how to use:                                                                                       ###
 ### 1) Swap to the high-memory gallade cluster by executing `module swap cluster/gallade`             ###
 ### 2) Navigate the to root of the project                                                            ###
-### 3) Submit the job to the queue with `qsub suffixarray/build_suffix_array.pbs`                     ###
+### 3) Submit the job to the queue with `qsub sa-builder/build-compressed.pbs`                        ###
 #########################################################################################################
 
 # go to cluster with high memory
 module swap cluster/gallade
 
 # define requested memory, cpu resources and email notifications
 #PBS -m abe
-#PBS -l walltime=10:00:00
+#PBS -l walltime=6:00:00
 #PBS -l mem=750gb
 # ask for 1 node, 1 cpu (not more needed since we don't have parallelism)
-#PBS -l nodes=1:ppn=1
+#PBS -l nodes=1:ppn=all
 #PBS -N suffix_array_construction_uniprot
 
 # define output and error files

diff --git a/sa-builder/build.pbs b/sa-builder/build.pbs
@@ -6,7 +6,7 @@
 ### how to use:                                                                                       ###
 ### 1) Swap to the high-memory gallade cluster by executing `module swap cluster/gallade`             ###
 ### 2) Navigate the to root of the project                                                            ###
-### 3) Submit the job to the queue with `qsub suffixarray/build_suffix_array.pbs`                     ###
+### 3) Submit the job to the queue with `qsub sa-builder/build.pbs`                                   ###
 #########################################################################################################
 
 # go to cluster with high memory
@@ -17,7 +17,7 @@ module swap cluster/gallade
 #PBS -l walltime=10:00:00
 #PBS -l mem=750gb
 # ask for 1 node, 1 cpu (not more needed since we don't have parallelism)
-#PBS -l nodes=1:ppn=1
+#PBS -l nodes=1:ppn=all
 #PBS -N suffix_array_construction_uniprot
 
 # define output and error files