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min bound Coverage #139: Commit ed2d746 pushed by tibvdm
August 27, 2024 14:43 1m 52s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 27, 2024 14:43 1m 52s
add timings to track filling the cache Coverage #138: Commit 2d0b2a4 pushed by tibvdm
August 27, 2024 12:15 1m 47s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 27, 2024 12:15 1m 47s
add print information to track filling the cache Coverage #137: Commit a26ce06 pushed by tibvdm
August 27, 2024 12:07 1m 46s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 27, 2024 12:07 1m 46s
pass lcp Coverage #136: Commit c0f9b72 pushed by tibvdm
August 27, 2024 11:57 1m 40s debug
debug
August 27, 2024 11:57 1m 40s
fix tests Coverage #135: Commit b6ff10d pushed by tibvdm
August 27, 2024 09:57 1m 36s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 27, 2024 09:57 1m 36s
fix tests Coverage #134: Commit b6ff10d pushed by tibvdm
August 27, 2024 09:57 1m 41s il-equate
il-equate
August 27, 2024 09:57 1m 41s
set L to I Coverage #133: Commit 031a609 pushed by tibvdm
August 27, 2024 09:36 1m 44s il-equate
il-equate
August 27, 2024 09:36 1m 44s
offset array for efficiency + renaming bounds_cache file Coverage #132: Commit cdb434d pushed by tibvdm
August 27, 2024 08:30 1m 41s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 27, 2024 08:30 1m 41s
Do not store parameter K as a constant, but a field. Coverage #131: Commit 54c5ef4 pushed by tibvdm
August 27, 2024 07:21 1m 43s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 27, 2024 07:21 1m 43s
revert Coverage #130: Commit c0be413 pushed by tibvdm
August 26, 2024 21:49 1m 41s bench-cache-hits
bench-cache-hits
August 26, 2024 21:49 1m 41s
Simple log for cache hit/missed Coverage #129: Commit 99f3a0b pushed by tibvdm
August 26, 2024 21:45 1m 46s bench-cache-hits
bench-cache-hits
August 26, 2024 21:45 1m 46s
Simple log for cache hit/missed Coverage #128: Commit 6fcc66a pushed by tibvdm
August 26, 2024 21:36 2m 33s bench-cache-hits
bench-cache-hits
August 26, 2024 21:36 2m 33s
Optimize the index functions Coverage #127: Commit 53c9490 pushed by tibvdm
August 26, 2024 21:25 1m 52s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 21:25 1m 52s
remove shady lcp hack Coverage #126: Commit deccd8a pushed by tibvdm
August 26, 2024 19:27 2m 51s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 19:27 2m 51s
Move while loop to the comment Coverage #125: Commit 32c8a83 pushed by tibvdm
August 26, 2024 19:21 2m 49s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 19:21 2m 49s
Don't search te entire search string again Coverage #124: Commit 6aab11b pushed by tibvdm
August 26, 2024 19:17 2m 52s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 19:17 2m 52s
Do more lookups, but try to avoid the largests bounds this way Coverage #123: Commit f7c66a2 pushed by tibvdm
August 26, 2024 18:52 2m 58s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 18:52 2m 58s
Try to get more hits Coverage #122: Commit 6d8c54e pushed by tibvdm
August 26, 2024 18:30 2m 51s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 18:30 2m 51s
Don't search for peptides where the k-mer has no matches Coverage #121: Commit 252d9c8 pushed by tibvdm
August 26, 2024 17:52 1m 43s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 17:52 1m 43s
Set K to 5 for testing purposes Coverage #120: Commit 1047e43 pushed by tibvdm
August 26, 2024 17:46 2m 38s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 17:46 2m 38s
fix empty string and add TODO for IL equality Coverage #119: Commit fc8551e pushed by tibvdm
August 26, 2024 17:45 1m 45s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 17:45 1m 45s
first bad implementation for a kmer lookup cache Coverage #118: Commit b95b9f9 pushed by tibvdm
August 26, 2024 09:51 1m 42s feature/sa-bounds-optimization
feature/sa-bounds-optimization
August 26, 2024 09:51 1m 42s
Use two separate functions Coverage #117: Commit 59e5fda pushed by tibvdm
August 23, 2024 11:39 1m 43s feature/tryptic-option
feature/tryptic-option
August 23, 2024 11:39 1m 43s
remove tryptic check for testing purpose Coverage #116: Commit 1791652 pushed by tibvdm
August 23, 2024 11:28 1m 43s feature/tryptic-option
feature/tryptic-option
August 23, 2024 11:28 1m 43s
remove tryptic check for testing purpose Coverage #115: Commit 8fca836 pushed by tibvdm
August 23, 2024 11:21 1m 43s feature/tryptic-option
feature/tryptic-option
August 23, 2024 11:21 1m 43s