Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Automatically switch between XML and DAT parser for UniProtKB #45

Merged
merged 3 commits into from
Mar 14, 2024

Conversation

pverscha
Copy link
Member

UniProtKB is provided in both the XML and DAT file formats. We've implemented a parser for either format and found out (after some benchmarking) that parsing the DAT file is much faster than the XML file. This PR introduces support for automatically switching between these parsers depending on the file type of the UniProtKB resource provided to the build_database.sh script.

@pverscha pverscha added the enhancement New feature or request label Mar 14, 2024
@pverscha pverscha self-assigned this Mar 14, 2024
@pverscha pverscha merged commit 449a4d4 into master Mar 14, 2024
6 checks passed
@pverscha pverscha deleted the feature/auto-switch-parsers branch August 1, 2024 09:14
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant