Automatically switch between XML and DAT parser for UniProtKB #45
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
UniProtKB is provided in both the XML and DAT file formats. We've implemented a parser for either format and found out (after some benchmarking) that parsing the DAT file is much faster than the XML file. This PR introduces support for automatically switching between these parsers depending on the file type of the UniProtKB resource provided to the
build_database.sh
script.