Fix order of params

unipept · May 6, 2024 · 9379ab4 · 9379ab4
1 parent 8c2306e
commit 9379ab4
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Showing 2 changed files with 7 additions and 6 deletions.
diff --git a/scripts/parallel_index.sh b/scripts/parallel_index.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-# Define MySQL connection parameters
+# Define PSQL connection parameters
 DB_USER="unipept"
 DB_PASSWORD="unipept"
 DB_HOST="localhost"

diff --git a/scripts/parallel_load.sh b/scripts/parallel_load.sh
@@ -1,9 +1,10 @@
 shopt -s expand_aliases
 
-export db=unipept
-export user=unipept
-export pass=unipept
-export host=localhost
+# Define PSQL connection parameters
+export DB_USER="unipept"
+export DB_PASSWORD="unipept"
+export DB_HOST="localhost"
+export DB_NAME="unipept"
 
 dir="$1"
 
@@ -20,7 +21,7 @@ function load_table() {
     else
         lz4cat $file
     fi
-    } | PGPASSWORD=$pass psql -U $user -c "COPY $db.$tbl FROM STDIN WITH (FORMAT TEXT, DELIMITER E'\t', HEADER false, NULL '\N');" 2>&1
+    } | PGPASSWORD=$DB_PASSWORD psql -U $DB_USER -h "$DB_HOST" -c "COPY $DB_NAME.$tbl FROM STDIN WITH (FORMAT TEXT, DELIMITER E'\t', HEADER false, NULL '\N');" 2>&1
 }
 
 export -f load_table