use tab separator in import

unipept · Feb 17, 2021 · 4fd4d41 · 4fd4d41
1 parent dd047aa
commit 4fd4d41
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/.github/workflows/static_database.yml b/.github/workflows/static_database.yml
@@ -35,11 +35,11 @@ jobs:
           sqlite3 output.db < workflows/static_database/structure.sql 
           
           # Read all generated data into this database
-          zcat data/tables/ec_numbers.tsv.gz | sed "s/\t/$/g" | sqlite3 -csv -separator "$" output.db '.import /dev/stdin ec_numbers'
-          zcat data/tables/go_terms.tsv.gz | sed "s/\t/$/g" | sqlite3 -csv -separator "$" output.db '.import /dev/stdin go_terms'
-          zcat data/tables/interpro_entries.tsv.gz | sed "s/\t/$/g" | sqlite3 -csv -separator "$" output.db '.import /dev/stdin interpro_entries'
-          zcat data/tables/taxons.tsv.gz | sed "s/\t/$/g" | sqlite3 -csv -separator "$" output.db '.import /dev/stdin taxons'
-          zcat data/tables/lineages.tsv.gz | sed "s/\t/$/g" | sqlite3 -csv -separator "$" output.db '.import /dev/stdin lineages'
+          zcat data/tables/ec_numbers.tsv.gz | sqlite3 -csv -separator '	' output.db '.import /dev/stdin ec_numbers'
+          zcat data/tables/go_terms.tsv.gz | sqlite3 -csv -separator '	' output.db '.import /dev/stdin go_terms'
+          zcat data/tables/interpro_entries.tsv.gz | sqlite3 -csv -separator '	' output.db '.import /dev/stdin interpro_entries'
+          zcat data/tables/taxons.tsv.gz | sqlite3 -csv -separator '	' output.db '.import /dev/stdin taxons'
+          zcat data/tables/lineages.tsv.gz | sqlite3 -csv -separator '	' output.db '.import /dev/stdin lineages'
           
           # Compress the database before uploading it to a Github release
           zip output.zip output.db