print protein in api

unipept · Mar 7, 2024 · fa07648 · fa07648
1 parent beee804
commit fa07648
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/app/controllers/api/api_controller.rb b/app/controllers/api/api_controller.rb
@@ -46,8 +46,8 @@ def pept2prot
       end
     else
       @result = Hash.new { |h, k| h[k] = Set.new }
-      @sequences.pluck(:sequence, 'uniprot_entries.uniprot_accession_number', 'uniprot_entries.name', 'uniprot_entries.taxon_id').each do |sequence, uniprot_id, protein_name, taxon_id|
-        @result[sequence] << [uniprot_id, protein_name, taxon_id]
+      @sequences.pluck(:sequence, 'uniprot_entries.uniprot_accession_number', 'uniprot_entries.name', 'uniprot_entries.taxon_id', 'uniprot_entries.protein').each do |sequence, uniprot_id, protein_name, taxon_id, protein|
+        @result[sequence] << [uniprot_id, protein_name, taxon_id, protein]
       end
     end
 

diff --git a/app/views/api/api/pept2prot.json.erb b/app/views/api/api/pept2prot.json.erb
@@ -7,6 +7,7 @@
       v.map do |u|
         { "peptide" => k,
           "uniprot_id" => u.uniprot_accession_number,
+
           "protein_name" => u.name,
           "taxon_id" => u.taxon_id,
           "taxon_name" => u.taxon.try(:name),
@@ -20,11 +21,12 @@
       @input_order.map do |k|
       seq_index = @equate_il ? k.gsub(/I/,'L') : k
       v = @result[seq_index]
-      v.map do |uni,name,tax|
+      v.map do |uni,name,tax,prot|
         { "peptide" => k,
           "uniprot_id" => uni,
           "protein_name" => name,
           "taxon_id" => tax,
+          "protein" => prot
         }
       end
     end.flatten).html_safe