test output

app/controllers/mpa/pept2data_controller.rb

@@ -12,34 +12,36 @@ def pept2data
     # Request the suffix array search service
     search_results = search(peptides, @equate_il)
 
-    proteins = Set.new
-    search_results["result"].each do |result|
-      proteins.merge(result['uniprot_accessions'])
-    end
-
-    entries = UniprotEntry.where(uniprot_accession_number: proteins.to_a.uniq)
-
-    # Convert the retrieved entries to a hash (for easy retrieval)
-    accession_to_protein = Hash.new
-    entries.each do |entry|
-      accession_to_protein[entry.uniprot_accession_number] = entry
-    end
-
-    taxa = []
-    search_results["result"].each do |result|
-      uniprot_entries = result["uniprot_accessions"].map { |acc| accession_to_protein[acc] }
-      result["fa"] = UniprotEntry.summarize_fa(uniprot_entries)
-      @response[result["sequence"]] = result
-      taxa.append(result["lca"])
-    end
-
-    looked_up_lineages = Lineage.find(taxa)
-    looked_up_lineages.each do |lineage|
-      @lineages[lineage.taxon_id] = lineage.to_a_idx
-    end
-
-    @response.each do |_, entry|
-      entry["lineage"] = @lineages[entry["lca"].to_i]
-    end
+    @response = search_results
+
+    # proteins = Set.new
+    # search_results["result"].each do |result|
+    #   proteins.merge(result['uniprot_accessions'])
+    # end
+
+    # entries = UniprotEntry.where(uniprot_accession_number: proteins.to_a.uniq)
+
+    # # Convert the retrieved entries to a hash (for easy retrieval)
+    # accession_to_protein = Hash.new
+    # entries.each do |entry|
+    #   accession_to_protein[entry.uniprot_accession_number] = entry
+    # end
+
+    # taxa = []
+    # search_results["result"].each do |result|
+    #   uniprot_entries = result["uniprot_accessions"].map { |acc| accession_to_protein[acc] }
+    #   result["fa"] = UniprotEntry.summarize_fa(uniprot_entries)
+    #   @response[result["sequence"]] = result
+    #   taxa.append(result["lca"])
+    # end
+
+    # looked_up_lineages = Lineage.find(taxa)
+    # looked_up_lineages.each do |lineage|
+    #   @lineages[lineage.taxon_id] = lineage.to_a_idx
+    # end
+
+    # @response.each do |_, entry|
+    #   entry["lineage"] = @lineages[entry["lca"].to_i]
+    # end
   end
 end