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release version 1.1.0
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Felix Van der Jeugt committed Oct 6, 2021
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2 changes: 1 addition & 1 deletion Cargo.toml
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[package]
name = "frag_gene_scan_rs"
version = "1.0.1"
version = "1.1.0"
authors = ["Felix Van der Jeugt <[email protected]>"]
edition = "2018"
license = "GPL-3.0-or-later"
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12 changes: 6 additions & 6 deletions README.md
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### Additional options

* `-m meta_file`, `-n nucleotide_file` and `-a aa_file` can be used to
write output to specific files, instead of having the program create
filenames with predetermined extentions. These take precedence over
the `-o` option.
* `-m meta_file`, `-n nucleotide_file`, `-a aa_file` and `-g gff_file`
can be used to write output to specific files, instead of having the
program create filenames with predetermined extentions. These take
precedence over the `-o` option.

* Leaving out the `-o` option or using the name `stdout` causes
FragGeneScanRs to only write the predicted proteins to standard output.
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The complete list of options will be printed when running
`FragGeneScanRs --help`.

## Execution time
## Execution time (version 1.0.0)

Benchmarks were done using the `meta/benchmark.sh` script on a 16-core
Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz with 195GB RAM. The datasets
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./FragGeneScanRs -t 454_10 -s example/NC_000913-454.fna -o stdout -w 0 > /dev/null
```

## Memory usage
## Memory usage (version 1.0.0)

The figure below shows the memory footprint for multithreaded execution
of FGS, FGS+ and FGSrs on long reads (1328 bp). Total memory footprint
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