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compare to negative strand for dna_start_t_withstop
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tool                    TP         FP         TN         FN       prec      sens      spec       NPV       MCC
FGS                2494195     231257     656879     283010      91.51     89.81     73.96     69.89     62.58
FGS+               2661256     533556     361341     109188       83.3     96.06     40.38     76.79     46.79
prodigal           2488137     117535     745673     313996      95.49     88.79     86.38     70.37     70.36
FGSrs              2494195     231257     656879     283010      91.51     89.81     73.96     69.89     62.58
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Felix Van der Jeugt committed Sep 22, 2021
1 parent 692c10c commit 2a3ebcd
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/viterbi.rs
Original file line number Diff line number Diff line change
Expand Up @@ -616,7 +616,7 @@ fn build_genes(
dna.push(seq[t]);
dna_start_t_withstop = t + 1;
dna_start_t = t + 1;
if vpath[t] == hmm::State::M1 || vpath[t] == hmm::State::M4r {
if vpath[t] == hmm::State::M1r || vpath[t] == hmm::State::M4r {
if t > 2 {
dna_start_t_withstop = t - 2;
}
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