Release 0.2.0
What's Changed
- Add GDS file search lambda by @reisingerf in #152
- Bumped MySQL version 5.7 by @victorskl in #156
- Bump django from 3.1.1 to 3.1.6 by @dependabot in #158
- Genomics report model and endpoints by @brainstorm in #136
- Bump djangorestframework from 3.11.1 to 3.11.2 by @dependabot in #159
- Added X-Ray support by @victorskl in #160
- Deployed Python dependencies as Lambda layer by @victorskl in #161
- Added
serverless-prune-plugin
by @victorskl in #162 - Bump y18n from 4.0.0 to 4.0.1 by @dependabot in #163
- Bump django from 3.1.6 to 3.1.8 by @dependabot in #164
- Bcl convert output handler by @alexiswl in #157
- Fixed db migration merged by @victorskl in #165
- Fixed build issue with serverless by @victorskl in #166
- Fixed buildspec exclude serverless cli check by @victorskl in #167
- Improved CI build setup by @victorskl in #168
- Refactored
gspread
sheet download tolibgdrive
by @victorskl in #171 - Refactored LIMS processing package by @victorskl in #172
- Fixed orchestrator bcl convert output parsing by @victorskl in #173
- Implemented report persisting by @victorskl in #174
- Refactored S3 package by @victorskl in #175
- Implemented report processing through sqs queue by @victorskl in #176
- Fixed s3 testcase mock by @victorskl in #177
- Allowed report s3 object link none by @victorskl in #178
- Refactored gds module by @victorskl in #179
- Fixed germline jobs fastq preparation by @victorskl in #180
- ICA pipeline slack notification title and color format by @victorskl in #182
- Improved report type parsing from key by @victorskl in #184
- Added ops limit for Report data ingestion by @victorskl in #185
- Upgraded to Django 3.2 by @victorskl in #186
- Migrated to libica by @victorskl in #187
- Compact dependencies by @victorskl in #188
- Bump migration timeout by @victorskl in #189
- Removed report s3object fk constraint by @victorskl in #190
- Lab metadata ingestion by @andrei-seleznev in #181
- Improved labmetadata by @victorskl in #191
- Fixed yarn audit serverless dependency xmlhttprequest-ssl by @victorskl in #195
- Reports API by @brainstorm in #200
- implemented labmeta api endpoint by @andrei-seleznev in #194
- Subject view labmetadata endpoints by @andrei-seleznev in #199
- Add MultiQC report type by @brainstorm in #201
- Quick patch to prevent manual workflows from running by @alexiswl in #202
- Updated germline workflow to split top ups / reruns on the same run a… by @alexiswl in #206
- Addition of T/N workflow by @reisingerf in #204
- Deprecated nested routing by @victorskl in #207
- Added s3crawler offline tool to index S3 objects by @victorskl in #209
- Allow multiple tumor samples per subject by @reisingerf in #210
- Updated serverless v2 by @victorskl in #211
- Migrated to APIGateway v2 HttpApi by @victorskl in #212
- Added OpenAPI Swagger generator by @victorskl in #213
- Rolled back Werkzeug to v1 by @victorskl in #214
- Fixed CORS OPTIONS Preflight request by @victorskl in #215
- Added ICA pipeline related endpoints by @victorskl in #216
- Added keyword filter on reports and metadata endpoint by @victorskl in #217
- Bumped serverless version by @victorskl in #219
- override-cycles batchname fix by @alexiswl in #221
- Bump django from 3.2.3 to 3.2.4 by @dependabot in #222
- Improved Report format and reporting source check by @victorskl in #224
Full Changelog: 0.1.0...0.2.0