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lskatz committed Jun 6, 2024
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5 changes: 5 additions & 0 deletions _posts/2024-06-06-switch-to-bam.md
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---
layout: post
title: What does it take to switch over to BAM from FASTQ?
image: /assets/images/ubam-gather-round.png
tags:
- BAM
- uBAM
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uBAM is a strictly better storage format for your sequencing data, and you should switch to it today.

{% link assets/images/ubam-gather-round %}

## Background

It has been over 14 years since the formalization of the FASTQ format ({% cite Cock2009 %}),
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I wish I could say that I will address this right away, but with all my other responsibilities, it will be further down the road.
Therefore we can say from our own observations and personal experience, there is some work up ahead to get us moved over to uBAM files!

{% link assets/images/ubam-scroll-of-truth.jpg %}

### Footnotes

[^1]: To maintain focus in this article, I will gloss past interleaved reads.
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