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@github-actions github-actions released this 17 May 19:47
· 203 commits to main since this release
C_1.1.2
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Performance improvements

  • tsk_tree_seek is now much faster at seeking to arbitrary points along
    the sequence from the null tree (@molpopgen, #2661).

Features

  • The struct tsk_treeseq_t now has the variables min_time and max_time,
    which are the minimum and maximum among the node times and mutation times,
    respectively. min_time and max_time can be accessed using the functions
    tsk_treeseq_get_min_time and tsk_treeseq_get_max_time, respectively.
    (@szhan, #2612, #2271)

  • Add the TSK_SIMPLIFY_NO_FILTER_NODES option to simplify to allow unreferenced
    nodes be kept in the output (@jeromekelleher, @hyanwong,
    #2606, #2619).

  • Add the TSK_SIMPLIFY_NO_UPDATE_SAMPLE_FLAGS option to simplify which ensures
    no node sample flags are changed to allow calling code to manage sample status.
    (@jeromekelleher, #2662, #2663).

  • Guarantee that unfiltered tables are not written to unnecessarily
    during simplify (@jeromekelleher #2619).

  • Add x_table_keep_rows methods to provide efficient in-place table subsetting
    (@jeromekelleher, #2700).

  • Add tsk_tree_seek_index function

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