Fix silly min vs max bug for genome chunking. D'oh!

tseemann · Jun 22, 2015 · daebebf · daebebf
1 parent 64bae17
commit daebebf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/snippy b/bin/snippy
@@ -148,7 +148,7 @@ msg("Wrote $nfeat features to ref.gff");
 
 my $refsize = -s "$refdir/ref.fa";  # rough size in bases
 my $num_chunks = $cpus * 4; # oversample by 4 for run-time variation
-my $chunk_size = min( $MIN_FREEBAYES_CHUNK_SIZE, int( $refsize / $num_chunks ) ); # bases per chunk
+my $chunk_size = max( $MIN_FREEBAYES_CHUNK_SIZE, int( $refsize / $num_chunks ) ); # bases per chunk
 msg("Freebayes will process $num_chunks chunks of $chunk_size bp, $cpus chunks at a time.");
 
 # . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .