Archive du site du Hacking Industry Camp 2015

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

migrated from Gitlab

Non-Official Fork: Integrating Multi-Track Hi-C Data for Genome-Scale Reconstruction of 3D Chromatin Structure

💬 HiC. 基于 serverless 的社会化评论系统. 嗨C

This part is the python-rust interface for the iterative matrix correction

Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)

Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies

I'm sharing my automation of the 3D_DNA and SALSA Hi-C scaffolding pipelines.

TAD Calling using spectral clustering in R

HiC processing scripts used in the center.

A GAN-based method for Enhancing Hi-C data

R package: GSE84920.parser: Parsers for the GSE84920 Hi-C Data Sets of Ramani et al. (2017)

Multi-scale analysis of local differences in chromatin architecture

R package: TopDomStudy

Tools for processing HIC data.

A two-step model that combines neural network and ensemble learning to predict OCR–mediated interactions.

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data