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diffusion-maps

Here are 24 public repositories matching this topic...

dpeerlab / Palantir

Single cell trajectory detection

markov-chain dimensionality-reduction scrna-seq trajectory-generation diffusion-maps differentiation manifold-learning single-cell-genomics cell-fate-transitions scrna-seq-analysis

Updated Oct 11, 2024
Jupyter Notebook

dimkastan / PyTorch-Spectral-clustering

[Under development]- Implementation of various methods for dimensionality reduction and spectral clustering implemented with Pytorch

pytorch dimensionality-reduction graph-cut diffusion-maps pytorch-tutorial diffusion-distance laplacian-maps fiedler-vector pytorch-demo pytorch-numpy sorting-distance-matrix

Updated Oct 6, 2017
Python

rezakj / iCellR

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

clustering dropout batch-normalization imputation scrna-seq diffusion-maps clustering-algorithm 3d umap normalization 10xgenomics cell-type-classification intractive-graph cite-seq singel-cell-sequencing pseudotime scvdj-seq icellr

Updated Jul 10, 2024
R

wildart / ManifoldLearning.jl

A Julia package for manifold learning and nonlinear dimensionality reduction

julia dimensionality-reduction lle diffusion-maps manifold-learning isomap

Updated Mar 2, 2024
Julia

theislab / destiny

R package for single cell and other data analysis using diffusion maps

r dimensionality-reduction diffusion-maps

Updated Nov 15, 2024
R

jmbr / diffusion-maps

Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps

machine-learning module python3 diffusion-maps

Updated Jul 27, 2021
Python

PyDesigner

muscbridge / PyDesigner

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

dwi diffusion-maps diffusion-mri tractography diffusion-preprocessing kurtosis dmri dmriprep

Updated Sep 17, 2024
Python

alan-turing-institute / ThermodynamicAnalyticsToolkit

Sampling-based approach to analyse neural networks using TensorFlow

statistical-analysis thermodynamics neural-networks sampling diffusion-maps langevin-dynamics hamiltonian-dynamics

Updated Apr 10, 2019
Python

peterparity / conservation-laws-manifold-learning

Discovering Conservation Laws using Optimal Transport and Manifold Learning

machine-learning physics chaos conservation-laws diffusion-maps manifold-learning optimal-transport jax laplacian-eigenmaps integrable-systems wasserstein-distance

Updated Sep 23, 2023
Jupyter Notebook

gmishne / DiffusionNet

Diffusion Net TensorFlow implementation

tensorflow autoencoder outlier-detection diffusion-maps manifold-learning anomaly-detection

Updated Nov 10, 2017
Jupyter Notebook

gmishne / diffusion_maps

Matlab implementation of Diffusion Maps

matlab diffusion-maps manifold-learning

Updated Oct 11, 2017
MATLAB

gmishne / pyquest

pyquest: diffusion analysis of transposable arrays

clustering diffusion-maps manifold-learning tensor-decomposition bi-clustering hierarchical-clustering

Updated Sep 1, 2017
Jupyter Notebook

abt8601 / diffusion-maps

A library for diffusion maps (Numerical software development project)

machine-learning dimensionality-reduction diffusion-maps

Updated Jul 6, 2022
C++

ManuSetty / Palantir

Single cell trajectory detection

machine-learning entropy dimensionality-reduction scrna-seq trajectory-generation diffusion-maps differentiation manifold-learning manifold-learing single-cell-genomics single-cell-rna-seq single-cell-analysis cell-fate-transitions

Updated Aug 21, 2018
Jupyter Notebook

CompleteBlenderCreator / 07.Game.Asset.Pack-Original

(GA_CBC) http://gdev.tv/cbcgithub

blender game-development game-assets diffusion-maps 3d-printing 3d blend-files uv-mapping 3d-models blender-3d game-dev 3d-modelling displacement-map datablock

Updated May 22, 2018

sampolk / DiffusionLearning

This toolbox allows the implementation of the following diffusion-based clustering algorithms on synthetic and real datasets.

graph-algorithms clustering dimensionality-reduction hyperspectral-image-classification diffusion-maps spectral-clustering hyperspectral-imaging hyperspectral-images hyperspectral-image-analysis

Updated Jan 29, 2024
MATLAB

YW81 / diffusion_maps

Matlab implementation of Diffusion Maps

Updated Oct 11, 2017
MATLAB

bogdantoader / ManifoldLearningInPlatosCave

Numerical experiments showing artifacts resulting from dimensionality reduction.

dimensionality-reduction diffusion-maps manifold-learning

Updated Jul 9, 2023
Jupyter Notebook

gmishne / InformedGeometry-CoupledPendulum

clustering matlab diffusion-maps manifold-learning tensor-decomposition bi-clustering hierarchical-clustering tree-algorithms

Updated Sep 1, 2017
MATLAB

inespancorbo / Statistical-Computing

Mainly Non-Theory (Coding) Homework; Mainly Python

markov-chain applications expectation-maximization-algorithm bayesian-networks diffusion-maps stochastic-processes sampling-methods brownian-motion queueing-models

Updated Jan 5, 2021
Jupyter Notebook

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