Manifest.toml

# This file is machine-generated - editing it directly is not advised

[[ArgParse]]
deps = ["Logging", "TextWrap"]
git-tree-sha1 = "4a8f4df432fd8e8a96a142c53f9432b9022a92e6"
uuid = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
version = "1.1.1"

[[ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"

[[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

[[Automa]]
deps = ["DataStructures", "Printf", "Random", "Test", "TranscodingStreams"]
git-tree-sha1 = "c81526bf5f6fb4616b4e22a3cd62ac20e255fd3c"
uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
version = "0.8.0"

[[BGZFStreams]]
deps = ["CodecZlib", "Test"]
git-tree-sha1 = "b0e322aef9f1895a09a0c48a118111fd509f666a"
uuid = "28d598bf-9b8f-59f1-b38c-5a06b4a0f5e6"
version = "0.3.0"

[[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[BioAlignments]]
deps = ["BioGenerics", "BioSequences", "BioSymbols", "IntervalTrees", "LinearAlgebra"]
git-tree-sha1 = "f610a3a965f187890edb0b1fdef4f30d77852edd"
uuid = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"
version = "2.0.0"

[[BioGenerics]]
deps = ["TranscodingStreams"]
git-tree-sha1 = "57deb413ca9f4c8bc7d4c6e98ebe217ff728c737"
uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea"
version = "0.1.0"

[[BioSequences]]
deps = ["BioGenerics", "BioSymbols", "Combinatorics", "IndexableBitVectors", "Printf", "Random", "StableRNGs", "Twiddle"]
git-tree-sha1 = "093ccb9211bdc71924abf8e74a0790af11da35a7"
uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
version = "2.0.5"

[[BioSymbols]]
deps = ["Automa"]
git-tree-sha1 = "ec77888ac3e78f9d372c2b533bdb52668f9e2b09"
uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
version = "4.0.4"

[[BufferedStreams]]
deps = ["Compat", "Test"]
git-tree-sha1 = "5d55b9486590fdda5905c275bb21ce1f0754020f"
uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"
version = "1.0.0"

[[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "de4f08843c332d355852721adb1592bce7924da3"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "0.9.29"

[[CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.0"

[[Combinatorics]]
git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860"
uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
version = "1.0.2"

[[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "3.25.0"

[[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"

[[DataAPI]]
git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.6.0"

[[DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "4437b64df1e0adccc3e5d1adbc3ac741095e4677"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.9"

[[Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[DelimitedFiles]]
deps = ["Mmap"]
uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[Distributions]]
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
git-tree-sha1 = "e64debe8cd174cc52d7dd617ebc5492c6f8b698c"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.24.15"

[[Downloads]]
deps = ["ArgTools", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"

[[FASTX]]
deps = ["Automa", "BioGenerics", "BioSequences", "BioSymbols", "TranscodingStreams"]
git-tree-sha1 = "a980d6ac14c84c3ed17d0d07a0963a1c6d074b34"
uuid = "c2308a5c-f048-11e8-3e8a-31650f418d12"
version = "1.1.3"

[[FMIndexes]]
deps = ["Humanize", "IndexableBitVectors", "Mmap", "Random", "SuffixArrays", "Test", "WaveletMatrices"]
git-tree-sha1 = "97bd45e4245409bc6e5175461bfd96f2dc1561e3"
repo-rev = "master"
repo-url = "https://github.com/gmassman/FMIndexes.jl"
uuid = "df4c4d3e-99e2-490c-be50-cc7f88de63b5"
version = "1.0.0"

[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays"]
git-tree-sha1 = "dd4ab4257c257532003eb9836eea07473fcc732e"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "0.11.6"

[[GenomicFeatures]]
deps = ["BioGenerics", "DataStructures", "IntervalTrees"]
git-tree-sha1 = "9f3f122571d4b279e5176eded5ece804fde93694"
uuid = "899a7d2d-5c61-547b-bef9-6698a8d05446"
version = "2.0.4"

[[Glob]]
git-tree-sha1 = "4df9f7e06108728ebf00a0a11edee4b29a482bb2"
uuid = "c27321d9-0574-5035-807b-f59d2c89b15c"
version = "1.3.0"

[[Humanize]]
deps = ["Dates", "Printf", "Test"]
git-tree-sha1 = "f7f2a0a920ad015da58d016587aaf4af4fa6ad5e"
uuid = "7ec9b9c5-1998-51e1-b7fc-fc3590c18259"
version = "1.0.0"

[[IndexableBitVectors]]
deps = ["Random", "Test"]
git-tree-sha1 = "b7f5e42dc867b8a8654a5f899064632dac05bc82"
uuid = "1cb3b9ac-1ffd-5777-9e6b-a3d42300664d"
version = "1.0.0"

[[Indexes]]
deps = ["BGZFStreams", "BioGenerics", "GenomicFeatures", "TranscodingStreams"]
git-tree-sha1 = "275bce824b40fd2e70358e0a652ba1b34172f240"
uuid = "4ffb77ac-cb80-11e8-1b35-4b78cc642f6d"
version = "0.1.3"

[[IntArrays]]
deps = ["Mmap", "Random", "Test"]
git-tree-sha1 = "dee0d841f11db7d54d87c12804d28a40db4e0749"
uuid = "45d23951-e9a5-545c-8049-e4c4887f5525"
version = "0.2.0"

[[InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[IntervalTrees]]
deps = ["InteractiveUtils", "Profile", "Random", "Test"]
git-tree-sha1 = "6c9fcd87677231ae293f6806fad928c216ab6658"
uuid = "524e6230-43b7-53ae-be76-1e9e4d08d11b"
version = "1.0.0"

[[JLLWrappers]]
git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.2.0"

[[LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"

[[LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"

[[LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"

[[LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"

[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[Libz]]
deps = ["BufferedStreams", "Random", "Test"]
git-tree-sha1 = "bf1510e80f1e0dba2297b05b59a3a7c8175a9517"
uuid = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7"
version = "1.0.1"

[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"

[[MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"

[[Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "f8c673ccc215eb50fcadb285f522420e29e69e1c"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "0.4.5"

[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"

[[MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"

[[NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"

[[Nullables]]
git-tree-sha1 = "8f87854cc8f3685a60689d8edecaa29d2251979b"
uuid = "4d1e1d77-625e-5b40-9113-a560ec7a8ecd"
version = "1.0.0"

[[OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9db77584158d0ab52307f8c04f8e7c08ca76b5b3"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.3+4"

[[OrderedCollections]]
git-tree-sha1 = "4fa2ba51070ec13fcc7517db714445b4ab986bdf"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.4.0"

[[PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "f82a0e71f222199de8e9eb9a09977bd0767d52a0"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.0"

[[Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[Profile]]
deps = ["Printf"]
uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"

[[QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.4.1"

[[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"

[[Random]]
deps = ["Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[Rmath]]
deps = ["Random", "Rmath_jll"]
git-tree-sha1 = "86c5647b565873641538d8f812c04e4c9dbeb370"
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
version = "0.6.1"

[[Rmath_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "d76185aa1f421306dec73c057aa384bad74188f0"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.2.2+1"

[[SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"

[[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

[[SharedArrays]]
deps = ["Distributed", "Mmap", "Random", "Serialization"]
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"

[[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[SortingAlgorithms]]
deps = ["DataStructures", "Random", "Test"]
git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "0.3.1"

[[SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[SpecialFunctions]]
deps = ["ChainRulesCore", "OpenSpecFun_jll"]
git-tree-sha1 = "5919936c0e92cff40e57d0ddf0ceb667d42e5902"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "1.3.0"

[[StableRNGs]]
deps = ["Random", "Test"]
git-tree-sha1 = "b57c4216b6c163a3a9d674f6b9f7b99cdccdb959"
uuid = "860ef19b-820b-49d6-a774-d7a799459cd3"
version = "0.1.2"

[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

[[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"]
git-tree-sha1 = "400aa43f7de43aeccc5b2e39a76a79d262202b76"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.3"

[[StatsFuns]]
deps = ["Rmath", "SpecialFunctions"]
git-tree-sha1 = "3b9f665c70712af3264b61c27a7e1d62055dafd1"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "0.9.6"

[[SuffixArrays]]
git-tree-sha1 = "d7c29668b00abd0ee5f28180a10b7fe8b8cd8155"
uuid = "24f65c1e-0a10-5d3d-8a1f-a83399f3fced"
version = "1.0.0"

[[SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"

[[TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"

[[Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"

[[Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[TextWrap]]
git-tree-sha1 = "9250ef9b01b66667380cf3275b3f7488d0e25faf"
uuid = "b718987f-49a8-5099-9789-dcd902bef87d"
version = "1.0.1"

[[TranscodingStreams]]
deps = ["Random", "Test"]
git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.5"

[[Twiddle]]
git-tree-sha1 = "29509c4862bfb5da9e76eb6937125ab93986270a"
uuid = "7200193e-83a8-5a55-b20d-5d36d44a0795"
version = "1.1.2"

[[UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[[Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[WaveletMatrices]]
deps = ["IndexableBitVectors", "IntArrays"]
git-tree-sha1 = "fd026818c22901c6888aa3e983918f41ffd316b9"
repo-rev = "master"
repo-url = "https://github.com/BioJulia/WaveletMatrices.jl"
uuid = "c0580c95-5bac-53b2-8f35-dbbbc8487a1f"
version = "0.2.0"

[[XAM]]
deps = ["Automa", "BGZFStreams", "BioAlignments", "BioGenerics", "BioSequences", "GenomicFeatures", "Indexes", "Printf", "TranscodingStreams"]
git-tree-sha1 = "fc98c10e8151054353ded66914f38fbac15fc899"
uuid = "d759349c-bcba-11e9-07c2-5b90f8f05f7c"
version = "0.2.6"

[[Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

[[nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"

[[p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"